Chr:
Chr4
Start:
14222320
End:
14228330
Strand:
-
Ref_name:
LOC107280512
Sequence
(XR_001544943.2):
CCCCUCAAACCCUAGCCACCACUGUUCACCCACCCCUUCUCUUCCUUUCCCCGCUCUUGCGCCGCCGCCGCCUUGCCUUCCCUCCCCGGCUUCUCCUCGCCAACGACAACUUGCUCCUCGCGCUCUCCCCUAUCCUCCCCUUCUCCUGGUGCUCCCUCCAUCACUCUCCUCCCAGUGGAGCAAGGGGACUGGGGGACUCGAUGGUGCAGGAUUGGAUUUGGGUGCGGUGAUGGAGUUUCGCCGACGACAGCCUCCCCCUCGAGCUCUCCCCUGUUCUCCCCCAUCUCCUGGCACUCCCCCACCGCUCUCCUCCCAGCAAGCAGAGGGAGCGGACGGCGUGGCACUAGAUCCGCGGCACGGUGAUGGAGUUCGAUAGUAAGGAGGUCAAUCUGUUGCCUCACCCCUUGACCCAUUGGGGAAGUCGUUCUGAUGUGUGCAAGGGAAAAAAAGAAGAAGAAAUCCCCUUCAUGUUGGAUCUAUGCAUGACUGAUCUGCUUCCCGUUCUGUGUCUACCACCUGCCAGCCAUGUUUUUUCUCAGAUGAGUGCAAACCUUUCCUCUAUUCUUGCUUGUCCAUGGUCAUGAGCUGCUUUUGACUUAUUGCCACAAUCUUAGCCGCUUGCCAUCUAUAUAUCUAUAUAUAUAUAAUGGUUGGAGGUCAGAGAUUAAUGGUAUGGCCCGUGCAAAUAUCUACCAAGAUUCAUACACCUACAUGCGCUGCUUAGGGACUCUGCAUUUUUCUUGGUAGAACUUGAAAUCUUGGUACAUAUAUAGAUGGCAAAUCUUUUCCUGUAGAACUGCAAAUGUUUUUUAAUUAAAAUUGAUACCCCCAUAUAUUUCUUGAUCACUGCCUGCGAACCUCUGUAACUAUUAGAUUCAGCUAUAACAUGGGAUUCUAAGUAGUGAAUAAGCUGGUUAUAUUUGCAUAUUUAAAUCCGAUUUUUAGGUGCCAUCUAUCUAUUUGUUGUAGUUCUCUACAGAAUCAAAUGCAAAAUCUGAAUGUUCAUAACCACUUUAUAAUUUAGGCCAGUUUGAGGUUGCGUCAUUGUGUGCCAUGCCGUCGAGCACCUACACACCUGCUCUUUUUAGGUUGAAUGUGCUUUGUGUUUCUAUGGUUCAUCCUAUGAAAUGAUUUAUUCUCUGAAAAGUUAUUGUUAUGCAUGGACUACUUUUGUUCCAGCAUGAUGACCCUUCUUGGGGGUGGAUCGACAGCUUGAGUAACCAUGGCUGUAAAAGUUCAAGCGGAGAAAGUUGCAUGGAUUGGUUGCUGCCAUAGAAGGUGCUCAAGUUUGUCAAUACUGUGGGUGCUGGUUAGCUUGAUGCUCUGUCGGCCGUGCGGCACCACCACUGUUUAACGAUUCCAGAUCUGGUGAUAUUGGAACCAUGUGUUGUCGCCUUGCCCAGGGUCCAUUUGUAGUUUGCUUCUCAUGGUCACUUUUGUAUUCAGGGUCUAUUUCAAAUCAUCAUGUAACAUCGGAAUUCAAGUUAUAUCACAGCCUGUGCUAGAAUGAAGUCCUUUCGUACUCAACAUUUACCAAUAUAAGUGCAUACAUAUCCUGACUUGUGAUACUUUUUACCAAUAACAAACGGGUAGGGCGCCGCGAAGCGCGCCUAAAGUUCUAGUAUAUAUAACAAGAGAGUGUGAAGUUUUUAUUGGAUUAAUCGCUUAACUUCCUAUAUGUAUUGAAAGUUCGAUAAAUUCAUGUUGAUUUUGGUUUGAGUUUAGGCAUGGAAAGUAUGGGGAAUUCUAGUGUCACAUGCAUUGCUUAAUUAGCUCCAGCUUUCCAAACAUCAUGAUCAAUGUAUUGGGAUCUCUUUUCUUUUGACGAAAUGGACACAUCGACAUAUACAUAGACCAAUGUAUAGUCCUAAACUCCUAAUGAAGCAUAUGAAUGCAUUCAUGCAUAAUUAGGCAGGGUCCCAUGUAGCUAAUUCAGAAGAGGUGAGAAUAAGAUGUUGAUUUAGGAAGCUUACGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.41%
ME_num:
MEP:
7.11%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.86
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.44199560846079 | 2.46870764388549e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.42930155172347 | 6.92144810320418e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.68320728848525 | 1.16993525171861e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.850266705301 | 6.08600505215277e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.79783519153604 | 0.00182134386579693 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.18535800263352 | 0.00947408373634571 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.25583238890329 | 4.39704632990297e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.76152355333462 | 0.000961175295967892 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.80977253536494 | 0.00294811051842427 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.13908400966723 | 1.68931299618293e-07 |