Chr:
Chr1
Start:
8722663
End:
8724343
Strand:
+
Ref_name:
LOC107280151
Sequence
(XR_001543580.2):
ACCUCUCAUGCCGUCUUCACCUUCGCUCUUCGUUGCGGCGCUCAAGGCCCCUCCUCCUCCGGAUUUGGAUUCGGUUUGUGAUCCUGAUAGGGCUCAUGGAAUUUAAUGAGUUUUGACAGUUGUCCGGAAAAUUAUCCAGAUGCAACCAAAAAAAAGAGGCAAGUAUGAUGUCACUCAGGCUCUCAGGGAACAAACUGGAGAGUAAAUAUUAGUAUGACGUAGUGACGACGCGAAGAUUUUAACCAUGUGGCUUUCGUUGUGGUCUGAUCCUUGACAAAAACCAGUGAAAUAUUGAAAAACUCUGAUCCUUCACAAAAACCAGUGAAACAUUGAAAAACAUGACGUCAAAGAGAAUAAUUUGUCCAAAUUCCUUAUAUUGGGGUGUGUUUAGUUCCACGUUAAAAUUAGAAGUUACUAAAAUUAAAAGUUUAUUGAAAAAAGUUAAAAGUUUGUGUGUAGAAAGUUUUGAUGUAAUGGAAAAGUUGAAAGUUUAAAUAAAAAAAUAUGAACUACAAGAGCUUGUAUCAUAUUGGACUAAAUUUGAUUUGAAAGAAAUUGUAUCAUAUUGGACUAAAUUUGAUUUGAAAGAAACUGGUGUGUUUCACGCUAAAAUUGAAAGUUUAGUUGAAAUUAAAACGAUGUGACGGAAAAAUUAGAAGUUUGUGUGUGUAGAAAAGUGAAAAGUAAAAAAUUUGAAGAAAAAGUUUGGAUUAAAACUCGCCUGAAACCUACUUCGAACAUACCACAGCUUUCAGACAGCUUUCAGCUAAAUAAGUGGAAAGCAGUGCUCAGGUCAGGAACGGAAAUAUGGCCAGCAUCACUGAAAGUCAGCAACGAAACAACAAGAACUCAGUCACAAACUCAAUUCAGUUUGGGCAACUCUUCUCCACUUCUCCAUAAAACAUCCAUUUGUGCAGAGGGCCAACAGCAGUUCCGGCUUCCGGUUUUAGUACAGUGGUCUCGAACCGUAUGUAGUACUUAAUUACCCUUUUUGCUUUUCUGGAUUAAUAUGUUGAGCUAUUGUCAUUUUAUAAGAUGAGUAUUUAUAAGUUGAGGUGUUGUUGAGUGCAUCAGUUCAAAACAAGACCAAGAGGUAUGAGAAUAUCUGAGUUGAACAUGUACUCUCUCCGUCCUAAAAUGUAAGUAUUUUAAACUAUGAAUAUAGACAUCUGUGUGCCCAGAUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.52%
ME_num:
MEP:
75.61%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.56
Avg Expression:
17.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.80854460224421 | 7.62118434839442e-26 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.5788742065651 | 8.26823017251449e-39 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.52447734929871 | 2.88227239937849e-21 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.18010819373873 | 0.00494235213089604 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.15345230688358 | 1.91180195483159e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.99349378520655 | 2.57860077139063e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.01897018807927 | 0.0108760819520202 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.64445678481079 | 3.75918467349705e-44 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.11992666003261 | 0.0148358520710043 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.04842542447975 | 0.0460636579505687 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.46187746700366 | 2.20648560974483e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.0331817534333 | 5.22511604390196e-11 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -2.36438792220277 | 2.2497521944082e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.98953893324911 | 1.47630068014302e-35 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.19367479447469 | 0.000449853209341257 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.14954287693744 | 6.21296721850485e-09 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.13970034523165 | 2.42193963356463e-19 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.27770730520804 | 4.035516139472e-09 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.4077756309055 | 1.24445144855504e-44 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.6266900395872 | 1.42692405926387e-05 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.85456657160629 | 2.10350672228398e-70 |