Chr:
Chr12
Start:
14626674
End:
14631514
Strand:
+
Ref_name:
LOC107279583
Sequence
(XR_001541906.2):
AUAACAAGGGAUUUGGGGCAACAAACCAACAGUGAAAAUCAUUUUUGCUAGCAGCCCACUUAAGUAACUUGCAACAAACAUCGGUUUUUGCUCGUGGUAAGGAGCACUGACUAUGGGAUGAAAUUCCCUAUGUUAAAAUCUCGCACCGAUCUUAUCUUCUCCUACUUUCACGAUCUUAUCUCCUCCCACUCUCACUUGGACUCUCCCUGUCCUUCCCCACCUCUCCUCUUCCCUUCCCCUACCCUGUGCCCCCACGUUCUCCCUCACCUCUUGUCUUCCCUCCCCAACCCUGUGGCCCCACCUCACCCCUCUCUGACUUCUCUUCACGUCAGUGACCACGGUGGACCGGUGACGGCGGCGACAACGGUGGACUACGAGGGGCGUGGGCCGUGGAUCCUCGGCCAGGAGGGGCGCAGGCGUGGUGGAUUCGGCCGCCACAGGGCCACGGGUGGUAAAUCCUAUCGUCAGAGGGCCACGUCUCGAGGUUCACUCGAAGACAGCGGACGCAGCAGCGACGGCGAUGGCGACGGGUGGCAGAUCCGGUGGUGCGAUGGUUGUAUACCGGCUAUACCCUCCCUCUCCCAUAUUUGGCCGUAGGGAGAUGGCGGUGGCAGUAGCCGAGGGGUUGGCAGAGAAUGGAGGAUCCUCAAAUCUCCAACCUCCAUUCUUGUGGCAUCCUCAAUCUACUGGAAUAUAUAUUUCACUGAAAGGCAAAGUUCUGUCAUAUCAUACUCAACUGUCUCUCCUUUUCUGGUCAAAAUUCACGAUGGAGAUUUGGUCUAUAGCUUCUGUUACAACACUUCAAUAGGGUGAAAAUGAAUGAAAAUGUGUGCGGCCCGGUGACAGGUAGCUGUCGAUGGGCGGCGCUAGGCCUUGUGACCAGUGGGUGAGCAGCUAGUUCGGGGAGGGCGCUGAGACUCAGUUGGGCGUGAUUGAAUGCGUGGGUCGAUCGGCGACAACGUUGGCCGGAGAUGCGAGGUGGUCAGUGGCAGUGAGUGAUGGAGUAAAACCUGAUGAUUGUGAUGGCUGGAGGCGGCACACGGUGGGAUCUCGCCAAAGCUGCUUGCCAAGGGAUGUCGAGGAGGUCAACAACCGGAACAAAAUGACCUGGUGGCUUGCUGGGAGGUUGGGGGAGGAUGGCAAUGACGCGCGAGGGAUGAUGACGAUGGCGUGCCAUCGAGAAUUUCCCUCACCAAUAAAAACAAGAGGAUGGGGCAUGUAAGGUUGAGCCUCCGGGACUUGUAGUUUGGAGAGGUGAUUUAGGGGCUUCCCCAUAUUGAGGGCUCUAGUAGGGACCCUGCUGGACCUGUACUUUUGAUAUCAACCGUAAAAGAAUAUUUGGGGACUAUAUUUGAGGAUCCCGCUGGAGAUGCUCUUACGACCCUGAACACUAUUAUGAUCCACACCUUGAAUCAUACUCCACCUUGUAGGAUCGAACAAUAUGAAGCAAACGAAUCAGAGGGGUGUGAAUUGUUGUAGUACCCAAAAACCAAACCUUCCAGAGGAAUAAAAAAUUAGAUAGCGAUCGGUGAAUUCGCUCUGGUCUGACUGCCCACCAUGUCGUUGUUGCCUCUCGCCGCUGCCAAUCUGACUGCCAUAUUCCCACUGGUCUGACCGCGCCGGUGUCGUCGGUCUGACCACCGGUGUUCCAUAAAUCGAAAAUCUCCCAAAUUAGAUUGAAUCUUUAUUACUUCUCUAUGUGUUUACAAAGUGGAACAACAACACUCCUCACGGAAAUCUCGACUAAACACGAAACUCUAACUUUUCUCACAACGCAACUCUCUCAAAAUCGAUACCGGGAGGCCAUACCCUCACUCUCUUUAUACCCAUGGUAGGCAUCCUAAAUCCACGAACCAACCUUGUACAAGAUGUCCUAAUCCCCUAGGAAACCUUCACGUACAAGAAACGGACAUUACAAACUCCAAUUGUACUAAAUUUGGACUACUCCAAAUUUGACUCCACCUCUCAUACGCACACAAUAUCUCCAUCGUAUACCAUAUAGAAUCUUCACCAACCAUAUGCAUUGAUGUCAAAGCUUGACUACUUCAACAUCUCUGGCCCGAGAGACAGUGUGUGAAGACCUGAUGGACCGUUGGUGCCUACAGGGACUAUACAUGUGAGACCAUCGUUAUACAGUAAAGGGGCGGGGAACGGUUAACGGACACUAAUGUGUGAAUGGAGAGAUUGUUGAAUCGUCCCCCACAUUGAUUUUGGAUGGUCAAGAGACCUAAUAAGUGGGGGAGCACCAUAAUUCAUUGGCUAUCUUUUAGGUGGGAAAAGCUUUUUAUGAUUCUAUAGAACCCAGCUGUACCGAACAACGCAAUCAAUUCUUAUAUACGUGGCAUUCCUUACUCUACUUAUAUAUGACAAGACAGGAAGAACAGGAUGUGAAGGAGAUAAAGAAAUUCGAUAGAACAUCAAUGGGUUCUUGCCGUGGUAGCUAGGAUGCAAAUCCUCUACAGUACUGCUGAUGCAGUAGCAGUGGUUGACAUGUGGGUCCGGGCCCACAUGUCAGUGUCUGCUACUGCAUCACUGUGGUAGCUAGGGUUGGGAGUAACCGGGAACCAUCUUAUUACACACAACCAUCUUCCUACAAAAUUCUCAGCUGAUUAUUUGUCAGGUUAGUAGGCUUCAGUAUGCACAUCUACCCGUCACGGUUCAUUGAUUAUAUUGAUCUCAGAAGGACGGUACAGCAUAGAUUAGUGGAAAUUUCAAAAUAGGCACAAUUGCAUCCAUACCCUCACUUUGAACUCUAACUACUGUUUUACCCCCCACAUUUUAGGGUUUGCAUUUUUCCCUCUCUUUUUGAAUAUGAACCAAUUGUUUACCCUCAUUUUUAACGUCUAGUUUAAUAGUGUUAGUUUUAGAACAAAAGGACAUUUAUACCCUUAGUUGAUGUUGCUUUUUUGCCCCAACUUUUAUACUGCCUGCUUCUCGUGCCGGAAGCCCCGUUGCCGUCUGCCUCGCCGCGCCGGAAGCCCCACGGCCGCCACAGGCCAUCGCCACGCCGGAAGCUCCACAACCGUCGCCUGCCAUUGCCGUGCAAGUGAGAUGGAAGCCUGCGACUGCCGCCUACCUCACCGCACAAGGGAGAGGGAAGUGUAGCCGCCGCUACACCGGAGACCUGUCGUCGACUCGCGCUCAACUGCUGCCGCGGCCAUCGCCGCAUGCACUUCCUGACAGAACUGCCGCGCACGCUGGAAUCGACACCAUCGCGGCGGUUCCCGCCCUCGCCGCGCAUGUCGGAACCGCCACCGUCGCCGAGCACACCGAAGCCGUUGCCGGUCGCCGCCUCAACACAACUGAGCUCAGCGAAGGAAUGGGCUUGGGUCCUUAUCCAUUCACUCAAGGGUACAAUAGUAAAUUAAAUCCUUUUUCUGUUUCAAUUUGUAUUUUUUUAACCCAAAGCCAUGGGUGUCAUCUAACGGGUGUCAAGAGUGAGGGCAAACGGCGUGUUCGUUUUCAAAAAGAGGUGGCAAAAAUGCAAACCCUAAAAAGUAGGGGUAAAAUAGCAGUUGACAUUCAAAAUGAGGGCAUGGAUGCAAUUGCCCCUUAAAAAUAUAAGUAAAAACACUUCAAGCAAAGUCAAAGUACUCUGCUACUUGCUAACCGAGGACUAUGUCACGGUAAUGAUUCGCCAUACAUUCCACUUGCUCAUGCUUUGCUCCAAGCUUGUGUUUCAUUAUAGAAUUUACUUAUCAUCUGCUCCUCCAUUUGCUUCCCUCUACUCCACUAACUAUUCAAUUUCUUUGUUAUAUGAUGUUGUUUAGUUACAUGACCAGGUGAAGUGUUUUGGGGAUGGACUGAUAAAAGAAUAGCUACUACCCCAAUUUUUUGUUGCUCUGUCAGUAAUGUGUAUGAAGUUCAGUACAUGCAUUCAUUCAUCCCAUUAAACAUCAGAAUCAAACAAGGCGCCCAUUGAACUCGGCUAUACAAUUCUUGAAUGACUGAAAUGUUUAUUAGACGAUAAAUUUCCUCUGUACCAUACCAUCUGAUCUCCUAUGCUCUAUAAAAGAGCAGAUGAAGUGUAGUAGCAACCUGUUUUUCUUGGCUGAUGUUGAGAGAUAUGAACAACAGGAGCUCAUUGUGUUUAGCCAGUCUACUCACUGCUUAGCUUGCUACGUACGGUAGGCCUGGGUGGCAUUGGGACAUCUCACAUAAGCCAGCGGUAAGCUGUUGACUGACCACUCUGCAGUUCCAGUCUCAAGCAAGUUACAGACUCAGAGUACAUCAAUGGACAUGUUUGGUGUUCAAGCCUGAACCAUUUGAUGUUAGCAACCGGUUUCUCCACACCUUGCAGAGUUUUCCAGGGUUGUUUGGUACUUGCUUCUCGAGUGGAUCUGGUCAUCUCAACGUCGAGAAACCCAUCUCCGGUCUACUCAGUUGUCUUGCCUAGGGGAACAUGAACCUUGUAAACUUGGAACAACUGAUUUGGGUGAGGCGGUGGCUGAAUAAGGUUACUUUGUGAUCAUUCGCACGAGCACGGCGGAGCAGAGCAAGACACUUUGACUGAAACGGAGAAGGCAGGGUUGGGUUUCCUUCGCAAAAUUCCAGCAGUCGCCGUCAUCCUCGAAACCUCUCGCCGAUGACACUGUGACGCUCUCCACGAACACAUACGCUUGCAAGCUAGGCGACGCAGCCACACAGCACGGCCUGUGCCAGCAACGAUGUGUGAUAAUUAAUAAGAUUACUGUUGGAGAUCGUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
20.73%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.81
Avg Expression:
2.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.09079606596506 | 0.00240858036172714 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.19278356426942 | 0.00103902895142548 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.46878748032125 | 0.0200089277840703 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.53985616275312 | 0.0276108319224084 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.70726208272358 | 0.00747366285226316 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.44373666576568 | 0.000135346103590893 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.36746521309706 | 2.95218211931389e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.72343520096046 | 0.00538646045225855 |