RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107279257

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

17516310

End:

17528138

Strand:

-

Ref_name:

LOC107279257

Sequence
(XR_001541004.1):

GGGGGGGGGGGGGGGAACCCGAAGGCAGCCGCCAAGCCGACGCUUCCUGUCCCCGGUGAGGGACGGUGGAGGUAAACUCCAAGACGGCGCGCGCAGAGAACCCAACGCGGCUGCGAGGAGGUGAAGGCAGCGACGCCGCUUCCCGGAGUGCUCCGGUAGGCUUAGGAGGUUUCGCAAUUCUUAGCAAGGAGGGAGACAGAGGAAAAAUGCAGUGGGGGGCGCAGCUACUAAGGCAGGUAGCAAAUGAGAUCUUUCACUCAAAAUUUGGAUGGAGGGGCGGCAGACAAAGAAUAGGAUGGGAAACAGAGGGGCUUUUAACUAUUUGCCACUCUUACGGAUGUUGCUUAACGAUUUGCCACUAGGCCCACAUGUCAUAGACACAUGAGGGCCCACAUGUCAUUGACAGGGUGUGGCAAAUCGUUAAUUGCCAUGUCACAAGAGUGGCAAAUAGUUAAAUUUCCCGGAAACGGAGGCAGGCUAAACUGAUGGCGAGGAGUUUGAAGACGACGAUGGAAACCUGUGUUUUGAUGCUUGAAAUGCCAAUGUUUUAGUCCUGUAAUAACUGUUUGUUUUCCUUUUUUUUUUCUCUCGUCUUAUCUGUAAGAACUUGAUGUUUCUGGAACUGUUGUAAUCAUGAGCGUUUUCUUUAAUGAAAACGGGGGAGAUACCCUCCCUUUCUCAAAAAAAAAAUCCCAAAUUUGCACAUUUGCUUCCCGAUUUAAUUUUAUUUGCAGGUAGUCGAGAAGUUGGAAUUCCAUGCAAUUAAUCCUAAGAAUUAUUGAAUUCCAGAGCAUGCCUUCUGAAAUUAGCCCAUUGCUUGUCCAAACUACAAGUUGAAACAUAUGUUUGCACUGAGGCAAUGCACAAGAACGAAAACAAUGCAUAACUGGAUGUUCAUGCCCCUCUUGGAAACCUCCAUAUAUGCACUCCUUAUGUAGCUCCUACUGCUCAUUGUUCCAAGGUCUAAAACCAUUUCUUUGCCAGGAUAGUAUCUUGUCCAACAAUAAAUAAUCUCCAUUAGUCUCAUAAUUUCAAGGACUGAAAACAUUUCUGGCACAUAGUAACCUUCUUGUAAACACAUUGCACACUUUCAUUUCUGCAGUUGGAUUUUGCACCUUGCCUGCAAUUCCAUCUAUAAUGUGAGUUAUGGGAAUUAUAGUGAUGAACUCCUCACUGGAAUAAAAAACUUUCAUAUCCAUUUCAUCAAGUUUAUGUGCUUUGCUAUCCACAAGCAUACAUGAUAUUUCUUGAAACACUUGAUCUGCUGCCUCUGCAAAUAAUGACACACCACCGACAUGAGUGAGCACGAUAUCCUUUCUCCUCCAGGCCAAGUGCACAGGACGGCGAGCAAUGCGUAUUCGUGACACCCACUUAACAACACGCUGGUUACGCUUGCUCAGCCUGGAGGAUGUGGCUGCAAUGGACUUGAUGCUAGACUGAGCGUCAGCUACACUUAUUGGACUUGAGGUGUAACUGAUAAGUGACGUGUCUGUACCUACAAGGUCUGUCAAGGGCAUGGCUGAGGUGGCAAGUGUGGACGUCGAACACUUGGUGGGAAUUGCUACCUUCUGUUCACUGGAGCAUAGCUGCACAUACUUGACAUCUAACAAGCAACACCCAUCAUAGAUGUAGCGUCCAUGGAGUGCAUGUUGAGCUCGUGUUACAUCUUAGAUGGACUUGAAAGAGACUACGGCCUCCACAUAGGUAACCGCCUCGAUCACAAUCAUCACAUGCUCCACAUCAUAAGGAACUAAUACUUGAUGAAGUACCUCUGUGGUUACCAGAUAGAGCACAUCGCUCACCGUGAAGUGAAGAACAGUUGUUAUGGUUGGCUCUUUGUUACUUGGCAUUUCAUCGAACACUUGUUGAGCGUCAGUGUAGGUGGUUGCUCCUAGGCUUGAAACAGCACCAACAGAAGCCUGUUAGGUAGAGGGGGCUAGCUAGGGAGGGCGAUACCUUGUUGAGGAUGUGAUCCACAGCAGCGCUCAAUUCAUCAACCUUCGCCUUAAACCUCGCCAUGAAUGCCUUCUGCUUAUGCAGCUCAACGGACUCCACCAUUGAUGCUUCCAUUGGGUAAGGUUUCCACUAUCUUCCUCGUCUCUCUACAGAUCGAACCUUAGGCUAGAAUCACGGUGCGUAAAACACCAACCCUUCCCUUGGGUCUACCAAUCAAGCAGCAAGAGAACCGAUCAGAACAGCUCUGAUACCAAAUUGUUAUGACCCGAGCUCGUGAGAGAUCGAAUCACACAAACUAGCAGCAGAAUACACUGAUAACUUAAGAUAAUUUGAGAAGAAAUUGCGGGAUCGGGUGAAGAACAGAAAGGGGGCAAAGGAAGAAGAACAGAAGGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

400

LEP:

81.3%

ME_num:

88

MEP:

17.89%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_meristematic_zone

Tau :

0.88

Avg Expression:

6.27

Tip: OSA-PHAS107279257 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated-6.061359914420910.0197383791711704