Chr:
Chr11
Start:
7806365
End:
7813334
Strand:
+
Ref_name:
LOC107279252
Sequence
(XR_001540971.2):
ACACACCACCCUCUUCACUUCGCCGCCGCCACCGCUGGCGACGGCGACCGCGAGCCUCCGCUAUCCGACCUUACCUCGCCGCUGCCGCUGCCGCCGGCUGGGAGAGUGAGGGGCGGACGCGCGGAGGACGGUGCAGGCGCUUCGGUUACGGUCGGCCGAGGACCUGCAGCGAGUUCGGUUCGAUCCGACAUGCUUAAUUCGAAAUAAACAGGACAAAUCAGGAAUCUUGAAGCGCAUCAGGUAGCUUAGCUUGGUCUGAACUUCACCAGAAUGUAGAAGAGAUUAUGCAGGAUUGCAAAUAUCUUGUACCUAAGGUGAGAAUACAGCAAUCGUUGUGCUCUUGUUGGAAAUACAAAGAAAAUUGAAGCUCCAAAUAUGUUCUUACUAUAAUCUUGCUAAUCGUACUACCAUUGCAAGAGUACCAAUCAAUCAGAGCACUACAAACAUGUGGCCUUGGAUUUCACAUGCCAUUUUCACUAUGAAUGGCAUUUUUCGAUUGACAAUCUAUUUGCGGUGGCACUGAUCUCGGUUUGUCUUGGAAGAACUAGUGACAAAAAUGUGCCAAUACGUGUGUUACCAGCUAAAGUAUCUUGUAUCCAGUAAAUAUGUUGGCAGAAGAACUAGGAUUAAUUUUGAAGAGUGGCCUAAUCUGAAACGUGCUCCAUCUUGUGUUCAUUUGUUGCCUGGUAUGCAUCUUGUCUAUCCCGUGGAACUCAAUGAGAGGAUGAUAGCAAUCUAACUGGAGUGUAGAAUGUUGGAAGCUCAAGAUUGGCACUAAACUAGGGUAUGCCAUCAUUUGAACUUGGGGGUCAGACAUGCAAAAGGUAAGCAAAACAUGCUGAACUAAAUGAAAGUUGGAUUCUGGUACCGCUUGGACAACCAAACCGCACAGUCCUACCAAAUUUUUGUGAGACCAAAGGAAGAGGAAGUAGCACUUAAGAACAAUAGGAAUGGGAGGCACUUUUCCUUCAUGUUCCCAUUUCUACAGCUCUUAUAUAAACCUUCUUUCUCCCUCUUCCCAAUCUCACUCUCAAGGUCCAGCCCAUCACUCGAAAUGCGGACAUCUUUUCCUACUAGACAAAUGUGCGAGACGAGAAGGAAGGGGAAGGAGCACCCAAGAACAAUAGGAAUGCGAGGCAUCAGAAAAAAAAAAAGCCGAACGUCGAAGAAAUUUAGAGCUCAUGCUUUCCACCAUGUUCCUAUUCCCCCUUCUCUUGAUUUCUUGAACCCUCUCAUUCUUUCCCUUCCCUAGCUCACCCUCCCUGCUGCCAAGUGCUGUGCAGAACUCGGAAAAUAAGCUAUGUGAGUGAUGAGCAAUGAGCACUCCUACUGCACGGUGUACCAUACUUCCAGUCCAUAGGACAUAUCAGUGAUGGCAGUGGGACUAUAUGGAUUUUGUGUUGUAAAUGUAGAUGAACACAUUUUUGGCUGUAGGGAGGUGGUCUUCUACUCUUGCAUAUCAA
Sequence
(XR_003239362.1):
CCAGUACACACCACCCUCUUCACUUCGCCGCCGCCACCGCUGGCGACGGCGACCGCGAGCCUCCGCUAUCCGACCUUACCUCGCCGCUGCCGCUGCCGCCGGCUGGGAGAGUGAGGGGCGGACGCGCGGAGGACGGUGCAGGCGCUUCGGUUACGGUCGGCCGAGGACCUGCAGCGAGUUCGGUUCGAUCCGACAUGCUUAAUUCGAAAUAAACAGGACAAAUCAGGAAUCUUGAAGCGCAUCAGGUAGCUUAGCUUGGUCUGAACUUCACCAGAAUGUAGAAGAGAUUAUGCAGGAUUGCAAAUAUCUUGUACCUAAGGUGAGAAUACAGCAAUCGUUGUGCUCUUGUUGGAAAUACAAAGAAAAUUGAAGCUCCAAAUAUGUUCUUACUAUAAUCUUGCUAAUCGUACUACCAUUGCAAGAGUACCAAUCAAUCAGAGCACUACAAACAUGUGGCCUUGGAUUUCACAUGCCAUUUUCACUAUGAAUGGCAUUUUUCGAUUGACAAUCUAUUUGCGGUGGCACUGAUCUCGGUUUGUCUUGGAAGAACUAGUGACAAAAAUGUGCCAAUACGUGUGUUACCAGCUAAAGUAUCUUGUAUCCAGUAAAUAUGUUGGCAGAAGAACUAGGAUUAAUUUUGAAGAGUGGCCUAAUCUGAAACGUGCUCCAUCUUGUGUUCAUUUGUUGCCUGGUAUGCAUCUUGUCUAUCCCGUGGAACUCAAUGAGAGGAUGAUAGCAAUCUAACUGGAGUGUAGAAUGUUGGAAGCUCAAGGUAUGAUUUCUCACUGUUAUAUAUACUUCAUCUCUUGCUAAUACAUGAGACAUUUGCUUGCUGCGCCAUGGCCUAUGUAAUCUUACUAGGAGUAGGUAGGAGCAAUUACUAUUGACUUGUUAUAAAUGGCCUCAGGUGUUCAUGAUACAAGUAAUGUCCAUUGUUUUCUCCAAGUAUUAUUCUUCACAAGAGUGCUCUAAACCAACCAUCUGUCUAGAUUAUGGAAUAGGCACACUAUAACAUGAAAUCAGUACAUGCAUUUACAUGUUGUCAACAAAAAUGUGUUGUUUAAUUUGAUUGGCACUAAACUAGGGUAUGCCAUCAUUUGAACUUGGGGGUCAGACAUGCAAAAGGUAAGCAAAACAUGCUGAACUAAAUGAAAGUUGGAUUCUGGUACCGCUUGGACAACCAAACCGCACAGUCCUACCAAAUUUUUGUGAGACCAAAGGAAGAGGAAGUAGCACUUAAGAACAAUAGGAAUGGGAGGCACUUUUCCUUCAUGUUCCCAUUUCUACAGCUCUUAUAUAAACCUUCUUUCUCCCUCUUCCCAAUCUCACUCUCAAGGUCCAGCCCAUCACUCGAAAUGCGGACAUCUUUUCCUACUAGACAAAUGUGCGAGACGAGAAGGAAGGGGAAGGAGCACCCAAGAACAAUAGGAAUGCGAGGCAUCAGAAAAAAAAAAAGCCGAACGUCGAAGAAAUUUAGAGCUCAUGCUUUCCACCAUGUUCCUAUUCCCCCUUCUCUUGAUUUCUUGAACCCUCUCAUUCUUUCCCUUCCCUAGCUCACCCUCCCUGCUGCCAAGUGCUGUGCAGAACUCGGAAAAUAAGCUAUGUGAGUGAUGAGCAAUGAGCACUCCUACUGCACGGUGUACCAUACUUCCAGUCCAUAGGACAUAUCAGUGAUGGCAGUGGGACUAUAUGGAUUUUGUGUUGUAAAUGUAGAUGAACACAUUUUUGGCUGUAGGGAGGUGGUCUUCUACUCUUGCAUAUCAA
Sequence
(XR_003239363.1):
ACCAGUACACACCACCCUCUUCACUUCGCCGCCGCCACCGCUGGCGACGGCGACCGCGAGCCUCCGCUAUCCGACCUUACCUCGCCGCUGCCGCUGCCGCCGGCUGGGAGAGUGAGGGGCGGACGCGCGGAGGACGGUGCAGGCGCUUCGGUUACGGUCGGCCGAGGACCUGCAGCGAGUUCGGUUCGAUCCGACAUGCUUAAUUCGAAAUAAACAGGACAAAUCAGGAAUCUUGAAGCGCAUCAGGUAGCUUAGCUUGGUCUGAACUUCACCAGAAUGUAGAAGAGAUUAUGCAGGAUUGCAAAUAUCUUGUACCUAAGGUGAGAAUACAGCAAUCGUUGUGCUCUUGUUGGAAAUACAAAGAAAAUUGAAGCUCCAAAUAUGUUCUUACUAUAAUCUUGCUAAUCGUACUACCAUUGCAAGAGUACCAAUCAAUCAGAGCACUACAAACAUGUGGCCUUGGAUUUCACAUGCCAUUUUCACUAUGAAUGGCAUUUUUCGAUUGACAAUCUAUUUGCGGUGGCACUGAUCUCGGUUUGUCUUGGAAGAACUAGUGACAAAAAUGUGCCAAUACGUGUGUUACCAGCUAAAGUAUCUUGUAUCCAGUAAAUAUGUUGGCAGAAGAACUAGGAUUAAUUUUGAAGAGUGGCCUAAUCUGAAACGUGCUCCAUCUUGUGUUCAUUUGUUGCCUGGUAUGCAUCUUGUCUAUCCCGUGGAACUCAAUGAGAGGAUGAUAGCAAUCUAACUGGAGUGUAGAAUGUUGGAAGCUCAAGGUAUGAUUUCUCACUGUUAUAUAUACUUCAUCUCUUGCUAAUACAUGAGACAUUUGCUUGCUGCGCCAUGGCCUAUGUAAUCUUACUAGGAGUAGGUAGGAGCAAUUACUAUUGACUUGUUAUAAAUGGCCUCAGGUGUUCAUGAUACAAGUAAUGUCCAUUGUUUUCUCCAAGUAUUAUUCUUCACAAGAGUGCUCUAAACCAACCAUCUGUCUAGAUUAUGGAAUAGGCACACUAUAACAUGAAAUCAGUACAUGCAUUUACAUGUUGUCAACAAAAAUGUGUUGUUUAAUUUGAUUGGCACUAAACUAGGGUAUGCCAUCAUUUGAACUUGGGGGUCAGACAUGCAAAAGGUCCAGCCCAUCACUCGAAAUGCGGACAUCUUUUCCUACUAGACAAAUGUGCGAGACGAGAAGGAAGGGGAAGGAGCACCCAAGAACAAUAGGAAUGCGAGGCAUCAGAAAAAAAAAAAGCCGAACGUCGAAGAAAUUUAGAGCUCAUGCUUUCCACCAUGUUCCUAUUCCCCCUUCUCUUGAUUUCUUGAACCCUCUCAUUCUUUCCCUUCCCUAGCUCACCCUCCCUGCUGCCAAGUGCUGUGCAGAACUCGGAAAAUAAGCUAUGUGAGUGAUGAGCAAUGAGCACUCCUACUGCACGGUGUACCAUACUUCCAGUCCAUAGGACAUAUCAGUGAUGGCAGUGGGACUAUAUGGAUUUUGUGUUGUAAAUGUAGAUGAACACAUUUUUGGCUGUAGGGAGGUGGUCUUCUACUCUUGCAUAUCAA
Sequence
(XR_003239364.1):
GUACACACCACCCUCUUCACUUCGCCGCCGCCACCGCUGGCGACGGCGACCGCGAGCCUCCGCUAUCCGACCUUACCUCGCCGCUGCCGCUGCCGCCGGCUGGGAGAGUGAGGGGCGGACGCGCGGAGGACGGUGCAGGCGCUUCGGUUACGGUCGGCCGAGGACCUGCAGCGAGUUCGGUUCGAUCCGACAUGCUUAAUUCGAAAUAAACAGGACAAAUCAGGAAUCUUGAAGCGCAUCAGGUAGCUUAGCUUGGUCUGAACUUCACCAGAAUGUAGAAGAGAUUAUGCAGGAUUGCAAAUAUCUUGUACCUAAGGUGAGAAUACAGCAAUCGUUGUGCUCUUGUUGGAAAUACAAAGAAAAUUGAAGCUCCAAAUAUGUUCUUACUAUAAUCUUGCUAAUCGUACUACCAUUGCAAGAGUACCAAUCAAUCAGAGCACUACAAACAUGUGGCCUUGGAUUUCACAUGCCAUUUUCACUAUGAAUGGCAUUUUUCGAUUGACAAUCUAUUUGCGGUGGCACUGAUCUCGGUUUGUCUUGGAAGAACUAGUGACAAAAAUGUGCCAAUACGUGUGUUACCAGCUAAAGUAUCUUGUAUCCAGUAAAUAUGUUGGCAGAAGAACUAGGAUUAAUUUUGAAGAGUGGCCUAAUCUGAAACGUGCUCCAUCUUGUGUUCAUUUGUUGCCUGGUAUGCAUCUUGUCUAUCCCGUGGAACUCAAUGAGAGGAUGAUAGCAAUCUAACUGGAGUGUAGAAUGUUGGAAGCUCAAGAUUGGCACUAAACUAGGGUAUGCCAUCAUUUGAACUUGGGGGUCAGACAUGCAAAAGGUCCAGCCCAUCACUCGAAAUGCGGACAUCUUUUCCUACUAGACAAAUGUGCGAGACGAGAAGGAAGGGGAAGGAGCACCCAAGAACAAUAGGAAUGCGAGGCAUCAGAAAAAAAAAAAGCCGAACGUCGAAGAAAUUUAGAGCUCAUGCUUUCCACCAUGUUCCUAUUCCCCCUUCUCUUGAUUUCUUGAACCCUCUCAUUCUUUCCCUUCCCUAGCUCACCCUCCCUGCUGCCAAGUGCUGUGCAGAACUCGGAAAAUAAGCUAUGUGAGUGAUGAGCAAUGAGCACUCCUACUGCACGGUGUACCAUACUUCCAGUCCAUAGGACAUAUCAGUGAUGGCAGUGGGACUAUAUGGAUUUUGUGUUGUAAAUGUAGAUGAACACAUUUUUGGCUGUAGGGAGGUGGUCUUCUACUCUUGCAUAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
91.46%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.65
Avg Expression:
12.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.19945863142739 | 2.32741727659312e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.09755985934489 | 9.77800087095932e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.26892240679745 | 6.53843489641635e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.25861699040409 | 2.61477413190682e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.35325061692694 | 1.75988754634187e-11 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.4473017707395 | 0.000119327788757124 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.23450402266813 | 0.00347085340730834 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.30985161536401 | 5.62591929210824e-08 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.04885806794872 | 0.000625742457413486 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.40175822945713 | 0.00512278157857788 |