Chr:
Chr10
Start:
20477833
End:
20485170
Strand:
-
Ref_name:
LOC107279124
Sequence
(XM_015758263.2):
ACUGCACCAAGAAGAAGCAGAUAGCGAAAAUGUCGUCGACUAACAGUUCAGGCGAUCCGGCGGCGGUGCGCGUGGUGGGCGGCUGGGCGAGCCCCUUCAUGAACCGCGUGGUGGUGGCGCUGAAGCUGAAGGGCGUGGAGCACGAGAUGUUGCAGGAGACGGUGGGGAAGAAGAGCGAGCUGCUGCUCCGGUCCAACCCGGUGCACAAGAAGAUCCCCGUGCUGCUCCACCACGGCAAGCCCAUCGCCGAGUCUCUCAUCAUCGUCUAGUACAUCGACGAGGUCUGGCCGGCCUCCAAUGGCGCCCCGUCCAUACUCCCCCGCGACCCCUACGGCCGCGCCGUCGAGCGGUUCUGGGCAAAGUACAUCGAUGACAAGGUCUUGCUUCUAUUGGGCCUGGAGUUGGUCAAGGUACUGCUGCAGGACAAGCUGUAGAAGGUAUUGCGAGACAGCCAGAAGCAGAAGGUAAAAUACGCGGUACUUUAUUGCUUAGUCUAGCUUUUAUGGAAGCUUUAACAAUUUAUGGACUAGUUGUGGCACUGGCGCUUUUAUUUGCGAACCCUUUUGUUUAAUCCUAAAAAAGAAAACGAGUCCUUUAGAUUAGAUACUUUCUUCUUUUUUUAGUAAAUUGGUAUUUGCUUCUGCAAUUCCAAUUAUAUCAAUACUUUACUCCUAAUUUAUUACUCCUAGAGUUUUCUAUUUAUGGGGACAGACAAUACCCCACCCCAGGAAUAGCUGAUUUGAGGAUGAUCAAUUUAGAGGAUAUGUUCGCCGUCUUGCUUCCCGCCCUUUGUUUAGGGCAGUGGAAAGUAUUUUUCCUUUUAUUUUAGGAAUUUUGGGAACAUUUCAACAAAGGAGGUCUUUCACAGGUCAAACGAGAUCUAAGACUUAAUCUAAAAGAAAUUACUAAAUUGAAUCUAUUUCUAUUAAAAAAAAUUGCAUUAAAAAAACCGAUCAAAAAGGGCGAGCGAAGUAAGUGAUCGAAAAACUUUGUUCUUUGUUCGUCCUAUCUAUAAGAGGAGAGCAUAUGAAAAAUGUAACCCAUUCUUUCGUUUUUUUAGCUCACUGGCCAUCCGCUGGGAGUUUCGGGCUUAAUACCGAUAUUUUAGCAACAAAUCUAAUAAAUCUAACUGUAGUGGUUGGUGUAUUGAUUUAUUUUGGAAAGGGAGUGUGUGCGAGUUGUCUAUUUCAAGAAUAGAUUGGAUCUAUCCGGCUGCACUUUAGAAUAUUUUUUAGUAUUUUUCGAAUAAAUAAGAAAAGGGUGCACGAUCUCGACGAAUUACUUCUGAAUAAAUGCAGAAAUCAUAUGAAAGAACCAUAGCAUUUCGCGACCUAUUGGUAAAUCAAAUCAACUUUGAUUCUCUAUAGACCAAUAAUAUGAGACCAUUAACACGGUUAAAGCUAAACUGCUUGAAGUCUAGGCAAAAGGGGGUACUCUUUCUACAACUAUAUUAGUAUUAGUACCAAAUGCUUUAAACAGGAAAUAGCUAAUGUAGAAUUUAUCUGAUAUAGAACACUCAUAUCGAUAAAAUGGUUUGAACUAUUUACUAGAAGGGGCACCCUGCCCUUUUUUAUCCAAUGCCGAAUCGACGACCUAUGUAUAAAAAAGGAGAAAGUUUUUGGAUUUGAAGAAAAAAGUAGGAAUUCUAUCCAUUUUCAUUUUCCAUUUUUCUAUUUAGUUUUUCUUAAUGAAAUUGAAAAUUUUAACUAAAGGGCAAAUACAAAUAAAAAAACAACUUUGCUGCCCACGAUAGAUUUUUAUCUAGGCGGAAGAGUCCUCUUAAUAUUUAUCUAGUCUUAUAUGGGUUUCGGUAUAUUGAAAUAUAAACAGAAAAGAGAGGGUAGAGGAUAGGCUCAUUACAUUAAAAAAAAUAUGGAAGUAGCCAUAGCAAAAAAAGAAAAAAGGGAGCGUGAGAGCCAAAUGAAUCGAAAGAUUCAUGUUUGGUUCGGGAAGAGAUCAUAAAAGUUGUAAACUUAAUAGCAAGGUAAUCUACUUUCAUUAAAAGAUUUAUUAGAUAAUCGAAAACAGAGGAUCUUGAGUACUAUUCGAAAUUCGGAAGAAUUGCGUAGAGGAACCAUUGAGCAGCUCGAAAAAGCUCGAAUUCGAUUACAGAAAGUCGAACUAGAAGCGGAUGAGUAUCGAAUGAAUGGAUACUCUGAGAUAGAACGAGAAAAAGCAAAUUUGAUUAAUGCCACUUCUAUUAGUUUGGAACAAUUAGAAAAGUCUAAAAACGAAACCCUUUAUUUUGAAAAACAAAGGGCGAUGAAUCAGGUCCGACAACGGGUUUUCCAACAAGCCGUACAAGGAGCUCUAGGAACUCUGAAUAGUUGUUUGAAUACCGAGUUACAUUUCCGUACGAUUCGUGCUAAUAUUAGCAUUCUCGGGGCCAUGGAAUGGAAGAGUUAAAUUAAUUAGGCCUUGAACUUCUACUUUCCUUUAGAAUUUAGGCAUUAUUUUUCCCCUUGCUUCCGAAAAAAAAAUAGUAAAGAAACACUAAUGGCAACCCUUCGAGUCGACGAAAUUCAUAAAAUUCUCCGCGAACGUAUUGAACAAUAUAAUAGAAAAGUAGGGAUUGAGAAUAUCGGUCGCGUAGUUCAAGUGGGGGAUGGGAUUGCUCGUAUUAUAGGUCUUGGUGAAAUAAUGUCAGGCGAAUUAGUCGAAUUUGCAGAAGGGACUAGGGGUAUUGCUCUGAAUUUGGAAUCCAAAAAUGUUGGGAUUGUAUUAAUGGGCGAUGGGUUGAUGAUACAAGAGGGCAGUUUUGUAAAAGCAACAGGAAGAAUUGCUCAGAUACCCGUGAGCGAGGCUUACUUGGGUCGUGUUAUAAAUGCUCUGGCUAAACCUAUUGAUGGGAGAGGCGAAAUUGUAGCUUCGGAAUCUCGCUUAAUUGAAUCUCCUGCUCCGGGUAUAAUUUCCAGGCGUUCUGUAUAUGAACCCCUUCAAACGGGGCUUAUUGCUAUCGAUUCGAUGAUUCCUAUUGGGCGCGGUCAGCGAGAGUUAAUUAUUGGGGACAGACAAACCGGCAAAACAGCAGUAGCUACAGAUACAAUUCUCAAUCAAAAAGGGCAAGAUGUAAUAUGUGUUUAUGUAGCUAUCGGUCAAAGAGCAUCCUCCGUAGCUCAAGUAGUAACUACUUUCCAUGAAGAGGGGGCCAUGGAAUACACUAUUGUAGUAGCUGAAAUGGCGGAUUCCCCUGCUACAUUACAAUACCUCGCUCCUUAUACGGGAGCAGCCCUGGCUGAGUAUUUUAUGUACCGCGAACGGCAUACUUUAAUAAUUUAUGAUGAUCUCUCCAAACAGGCACAAGCUUAUCGCCAAAUGUCCCUUCUAUUAAGAAGACCCCCCGGCCGCGAAGCUUACCCAGGGGAUGUUUUUUAUUUGCAUUCACGCCUUUUAGAAAGAGCCGCUAAAUUAAAUUCUCUUUUAGGGGAAGGAAGUAUGACUGCUUUACCAAUAGUUGAGACUCAAUCUGGAGACGUUUCCGCCUAUAUUCCUACUAAUGUAAUCUCCAUUACAGAUGGACAAAUAUUCUUAUCCGCAGAUCUAUUCAAUGCCGGAAUUCGGCCUGCUAUUAAUGUGGGUAUUUCCGUUUCCAGAGUAGGAUCCGCGGCUCAAAUUAAAGCCAUGAAACAAGUAGCUGGCAAAUCAAAAUUGGAAUUAGCUCAAUUCGCGGAGUUACAAGCCUUUGCACAAUUCGCCUCUGCUCUCGAUAAAACAAGUCAGAAUCAAUUGGCAAGGGGCCGACGAUUACGAGAAUUGCUUAAACAAUCCCAAGCAAAUCCUCUUCCAGUGGAAGAGCAGAUAGCUACUAUUUAUAUCGGAACAAGAGGAUAUCUUGAUUCCUUAGAAAUUGGACAGGUAAAGAAAUUUCUGGAUGAGUUACGUAAACACCUAAAAGAUACUAAACCUCAAUUCGAAGAAAUUAUAUCUUCUAGCAAGACAUUCACCGAGGAAGCGGAAAUCCUUUUGAAGGAAGCUAUUCAGGAACAACUCGAACGGUUUUCCCUUUAGGAACAAACAUAAAUUUUGCACGUCUACUCUUGUUAGUAGAAGUAGUAGAGGAGAAAUCGUUGAGAAAGAUUUUUCAUUUGAAUCAUGCAAAAAAGUUUUCUUAGUUUUUAGUAUAGUUAUUUAAAGAAUAGAUAGAAAUAAGAUUGCGUCCAAUAGGAUUUGAACCUAUACCAAAGGUUUAGAAGACCUCUGUCCUAUCCAUUAGACAAUGGACGCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.91%
ME_num:
MEP:
49.19%
HE_num:
HEP:
43.7%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.93
Avg Expression:
294.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.47715947913828 | 5.33866657848394e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.70977933091566 | 2.39659545065251e-41 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.83378411088172 | 7.65767416133856e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.70541144440626 | 0.00102327300648053 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.17558918905502 | 0.00499764494497837 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.21112631347487 | 1.58636784777762e-05 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.87548284035377 | 0.025647747785046 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.28030816975957 | 7.25430597692351e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.41806428140111 | 0.0200094928739945 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.78680158387768 | 4.62902221403043e-23 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.23865362933723 | 0.000200782534057226 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.86156517298055 | 5.76474856385144e-18 |