RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107278968

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

10894420

End:

10897582

Strand:

-

Ref_name:

LOC107278968

Sequence
(XM_015757238.2):

AGAAAAAGGAUAAUGGUAGCCCUCCCAUUAACUACUUCAUUUUCAUUUAUGAAUUUCAUAGUAAUAGAAAUCCAUGUCCUACCGAGACAGAAUUUCGAACUUGCUAUCCUCUUGCCUAAUAGGCAAAGAUUGACCUCUGUAGAAAGACUGAUUCAUUCGGAUCGAUAUGAGGACCCAACUACGUUGCAUUGCCAGAAUCCAUGUUCCAUAUUUGAAGAGGGUUGACCUCUGUGCUUCUCUCAUGGUACAAUCCUCUUCCUGCUGAGCCCCCUUUCUCCUCGGUCCACAGAGAAAAAAUGGAGGACUGGUGCCGACAGUUCAUCACGGAAGAAAGAACUCACAGAGCCGGGAUCGCUAACUAAUAGAAUAGUACUACUAACUAAUACUAAUAUAUAGAAAUAGAUAUCUAGAAAUAGAAACGAACUAAUAUAUAGAUAAUCGAAAUUGAAAAGAACUGUCUUUUCUGUAUACUUUCCCCGUUCUAUUGCUACCGCGGGUCUUAUGCAAUCGAUCGGAUCAUAUAGAUAUCCCUUCAACACAACAUAGGUCAUCGAAAGGAUCUCGGACGACUCACCAAAGCACGAAAGCCAGUUAGAAAAUGGAUUCCUAUUUGAAGAGUGCCUAACCGCAUGGAUAAGCUCACAUUAACCCGUCAAUUUUGGAUCCAAUUCGGGAUUUUUCUUGGGAAGUUUCGGGAAGAAAUUGGAAUGGAAUAAUAUAGAUUCAUACAGAGGAAAAGGUUCUCUAUUGAUGCAAACGCUGUACCUAGAGGAUAGGGAUAGAGGAAGAGGGAAAAAUCGAAAUGAAAUAAAUAAAGAAUAAAGCAAAAAAAAAAAGUCGAAGAUAGAAGAGCCCAGAUUCCAAAUGAAGAAAUGGAAACUCGAAAAGGAUCCUUCUGAUUCUCAAAGAAUGAGGGGCAAGGGGAUUGAUACCGAGAAAGAUUUCUUCUUAUUAUAAGACGUGAUUUGAUCCGCAUAUGUUUGGUAAAAGAACAAUCUUCUCCUUUAAUCAUAAAUGGAAAGUGUUCAAUUAGAACAUGAAAACGUGACUCAAUUGGUCUUAGUUAGUCUUCGGGACGGAGUGGAAGAAGGGCGGAGACUCUCGAACGAGGAAAAGGAUCCCUUCGAAAGAAUUGAACGAGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGGAAGGGUGACUUAUCUGUCGACUUUUCCACUAUCAACCCCAAAAAACCCAACUCUGCCUUACGUAAAGUUGCCAGAGUACGAUUAACCUCUGGAUUUGAAAUCACUGCUUAUAUACCUGGUAUUGGCCAUAAUUUACAAGAACAUUCUGUAGUAUUAGUAAGAGGAGGAAGGGUUAAGGAUUUACCCGGUGUGAGAUAUCGCAUUAUUCGAGGAGCCCUAGAUGCUGUCGCAGUAAAGAAUCGUCAACAAGGGCGUUCUAAAUAUGGGGUCAAAAAGCCAAAAAAAUAAGUGAUUCGUUUUUAGCCCUUAUAAAAAGAAAACGGAUUCUUGAACCUCUUUCACGCUCAUGUCACGUCGAGGUACUGCAGAAAAAAGAACUGCAAAAUCCGAUCCAAUUUUUCGUAAUCGAUUAGUUAACAUGGUGGUUAACCGUAUUAUGAAAGACGGAAAAAAAUCAUUGGCUUAUCAAAUUCUCUAUCGAGCCGUGAAAAAGAUUCAACAAAAGACAGAAACAAAUCCACUAUUGGUUUUACGUCAAGCAAUACGUAGAGUAACUCCCAAUAUAGGAGUAAAAACAAGACGUAAUAAAAAAGGAUCGACGCGGAAAGUUCCGAUUGAAAUAGGAUCUAAACAAGGAAGAGCACUUGCCAUUCGUUGGUUAUUAGAAGCAUCCCAAAAGCGUCCGGGUCGAAAUAUGGCUUUCAAAUUAAGUUCCGAAUUAGUAGAUGCUGCCAAAGGGGGUGGGGGUGCCAUACGCAAAAAGGAAGCGACUCAUAGAAUGGCAGAGGCAAAUAGAGCUCUUGCACAUUUUCGUUAAUCCAUGAACAGAAUCUAGGUAUGUAGACACAUGGAUCCAUACAUCUCGAUCGGAAAAGAAUCAAUAGAAGGAGAAUCGGACGAUAUCUUUCUCGAAACAAACAAAAAGGAAAAGAAAGAGAAAACAGAAAUCAUGAUCAACUAAGCCCUCUCGGGGGCUUGCUUAAGAAUAAGAAAGAGGAAUCUUAUGGAAAUAGCAUGGAAUAAGGUUUGAUCCUAUUCAUGGGGAUUCCGUAAAUAUCCCAUUCCAAAAAUCGAAACAAUCGGGACUUUUCGGAGAUUGGAUGCAGUUACUAAUUCAUGAUCUGGCAUGUACAGAAUGAAAACUUCAUUCUCGAUUCUACAAGAAUUUUUAUGAAAGCGUUUCAUUUGCUUCUCUUCCAGGGAAGUUUCAUUUUCCCAGAAUGUAUCCUAAUUUUUGGCCUAAUUCUUCUUCUGAUGAUCGAUUUAACCUCUGAUCAAAAAGAUAGACCUUGGUUCUAUUUCAUCUCUUCAACAAGUUUAGUAAUAAGCAUAACGGCCCUAUUGUUCCGAUGGAGAGAAGAACCUAUAAUUAGCUUUUCGGGAAAUUUCCAAACGAACAAUUUCAACGAAAUCUUUCAAUUUCUUAUUUUAUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

103

LEP:

20.93%

ME_num:

242

MEP:

49.19%

HE_num:

146

HEP:

29.67%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.87

Avg Expression:

72.69

Tip: OSA-PHAS107278968 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.844555398710890.0231099672260639
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.581192169104050.00409182568812354