Chr:
Chr12
Start:
16850913
End:
16853481
Strand:
-
Ref_name:
LOC107278683
Sequence
(XM_015763573.2):
CGGGAGACUGGGAGAGGGAGCGACCGACGCCUCUUCUCUCUCCCUCCCGCAUCCUUCCUCGCCGGCCGGCGAGCGCGCACGGAGAGGGAAAAAGGCGCCGGCCGGCGAGUGGGGCGGAGACGGCAGCUGGCCCCCGCCUGCUGCGCGCCUCUUCGGCGGGCUGCGACCGCCCGUCGCCGUCGAGCCCCAGUGCCCCACCCACGGCGCCCCGCCAUUGCCGGCCACCCUGCGUGUCCCCCGUUCGACCCAUGCAGCGAGGCGCGCCGCAUAUGACCUUGAAGAUCUCUCUCUCAUGCACAGCACAGUGCACACACGAUCUCACCACACUAGUACUAGCUACUUUGAGAGUGUAGUAGGAUGAGCCAGCAAGGGAUCUGGUAUGGCGACGUGUUUCCGGUGACCAGAAGCCUCGCGGCCAAGCCCAUCGCGCCGCGGGACGCGGCGACUUGCAGUCGGCGCGCGGAGAACCUCGUGUUGGGGAAGACGGUCAAGGGCGGCCCGGCCGCCGCCAUGGAGUCCGCGGCGAGUCGUAACGAGGAGAUGGGCGUCAUCGGACAUGACCAGUCCACGGACGCCACCGCCGAGCAUGGCGUCAACGUCUCCAAUACCCUCGUCCUCGGCGGCAGCCGCAUCGUCACUGAGUUCGUCGCCGGCCAGUUGUUGCUUGAGACCUCGGGAGAGUGUUACCGGUGAUAGAUCGGAGUCAAAUUGGGAGAAGUUGAUGUCCAGGGAUUAAGAGAUCAUGCGGGAUACUAAAGGCUAGAGGACAAUGCAUGUGGUGAUGAAGAAAUCCAUAUGGUAUACAAGAGGAUUUGUGUACAUAUGGAAAGAGGAGUCGAAUUUGGAAGGGAGUCCGAAUUCGGGAAGAUUGUUUGAGAUAAGGCAAGAGAUAAGUUGGAUACUUGCAAGAGAGGGUUUCCUACGUGAGUUAGGAGUCGUAAGUUGUGUUAGAUUCGUGGGCUUUGCACAGCCUACCUCAUGUAUAAAAAGAUAGGGAGGGUGAGGCCUCCCAGUAUCGGUUUUACAGAUAUUAGAGUUGCGAGAAAGUUAGGGUUUCGAGUUUAAUUCGAGAUUUUGGUAAGGAGUGCUGUUGGUGCACUUUGUAAACACUAGUUGAUGCAAUAAAGUCAAAAAGUUUCAAUCUA
Sequence
(XR_001541963.2):
CGGACGAUUGGACGACGGGAGACUGGGAGAGGGAGCGACCGACGCCUCUUCUCUCUCCCUCCCGCAUCCUUCCUCGCCGGCCGGCGAGCGCGCACGGAGAGGGAAAAAGGCGCCGGCCGGCGAGUGGGGCGGAGACGGCAGCUGGCCCCCGCCUGCUGCGCGCCUCUUCGGCGGGCUGCGACCGCCCGUCGCCGUCGAGCCCCAGUGCCCCACCCACGGCGCCCCGCCAUUGCCGGCCACCCUGCGUGUCCCCCGUUCGACCCAUGCAGCGAGGCGCGCCGCAUAUGACCUUGAAGAUCUCUCUCUCAUGCACAGCACAGUGCACACACGAUCUCACCACACUAGUACUAGCUACUUUGAGAGUGUAGUAGGAUGAGCCAGCAAGGGAUCUGGUAUGGCGACGUGUUUCCGGUGACCAGAAGCCUCGCGGCCAAGCCCAUCGCGCCGCGGGACGCGGCGACUUGCAGUCGGCGCGCGGAGAACCUCGUGUUGGGGAAGACGGUCAAGGGCGGCCCGGCCGCCGCCAUGGAGUCCGCGGCGAGUCGUAACGAGGAGAUGGGCGUCAUCGGACAUGACCAGUCCACGGACGCCACCGCCGAGCAUGGCGUCAACGUCUCCAAUACCCUCGUCCUCGGCGGCAGCCGCAUCGUCACUGAGUUCGUCGCCGGCCAGGUAAUCACACUGUUGCAUGAACACUGUUCGUCGUUGCCGUCUCUCCGAUUGUUCGAGCAGGAUGAUGGCGCCGCCACCCUCCGACUCCCGCAACCCUAGCUCCGUGUCGCAGACCGCCGAAGAAGUGCGCAGUGGGCGGGGGCCAGCUGCCGUCUCCGCCCCACUCGCCGGCCGGCGCCUUUUUCCCUCUCCGUGCGCGCUCGCCGGCCGGCGAGGAUGGAUGCCGGGAGGGAGAGACAAGAGGCGUCGGUCGCUCCCUCUCCCAGUCUCCCGUCGUCCAAUCGUUUGUGGAUAGAGAGGAUGGUAGGACCCACUGACAGUUGUUGCUUGAGACCUCGGGAGAGUGUUACCGGUGAUAGAUCGGAGUCAAAUUGGGAGAAGUUGAUGUCCAGGGAUUAAGAGAUCAUGCGGGAUACUAAAGGCUAGAGGACAAUGCAUGUGGUGAUGAAGAAAUCCAUAUGGUAUACAAGAGGAUUUGUGUACAUAUGGAAAGAGGAGUCGAAUUUGGAAGGGAGUCCGAAUUCGGGAAGAUUGUUUGAGAUAAGGCAAGAGAUAAGUUGGAUACUUGCAAGAGAGGGUUUCCUACGUGAGUUAGGAGUCGUAAGUUGUGUUAGAUUCGUGGGCUUUGCACAGCCUACCUCAUGUAUAAAAAGAUAGGGAGGGUGAGGCCUCCCAGUAUCGGUUUUACAGAUAUUAGAGUUGCGAGAAAGUUAGGGUUUCGAGUUUAAUUCGAGAUUUUGGUAAGGAGUGCUGUUGGUGCACUUUGUAAACACUAGUUGAUGCAAUAAAGUCAAAAAGUUUCAAUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.19%
ME_num:
MEP:
47.76%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.79
Avg Expression:
7.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.5898489773153 | 4.44329781325329e-12 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.46332638595022 | 0.000155561460263742 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.4417993361017 | 0.0240768112850551 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.81949748897224 | 8.11885960655935e-08 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.43190116560532 | 0.0234632537247768 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.03793709065462 | 0.000568193424420041 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.6926968146111 | 0.000190787798108532 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.44915423622158 | 0.0243617030933143 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.1976387696163 | 0.00556130133652679 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.19765913980653 | 0.00562229974673844 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.19776747171953 | 0.00559638540907299 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.19018038619951 | 2.87020209293714e-11 |
| 13 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.45856852148167 | 4.62371762289161e-05 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.77278206877935 | 5.49932469536441e-13 |