RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107278413

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

23847371

End:

23849354

Strand:

+

Ref_name:

LOC107278413

Sequence
(XR_001544400.2):

CUUCUCUAUCAUCGUUGAACUUUAUCGAGCCCUCCACACUACUCUCUCUUCUCCCUCGAUUCCCCUCUCUCCGCAACAUCCGCGUCUGCCUCACUCCUGGCCAGCGCCUAGCUGAGCGUGGCCGAGCCGCUGGACGCCUGCACCGCCAUGCUGGCCUCCCCUUCCCUCGUUGCCGCCGUCUCCGCCGUCUCUGCCGAGCCAAGCGGACAGCGCUGCUGGCCACCCCUCCAACCGGCGUUCGACCUCCUCCUUUGCCCGGCGCUGCUUUGGCUCGUGCACCCCGACGGCUUCCGUCGCCGCCGUGCCGGCCUUCCCCUAUCCUCCUCGAUGCCGCAGGGCCACCUUCAUGCCGCAGCCGCGCAGGGCCGAUCGGCGCCUGGCCGCCACCCAGCCGGGGCACCGCGCCGCCAUCGCCUCGACCCGGUCGCUGGCUGCGCCGCCGCCCCUAGCCUCGCCGCUGCACUGGGCCGCCCCCGAAUGGUUGCCCUCCGAAUGGCACACAAGGAAACAAACUUCAUUAAAUGUCCUCUCAAGCCUAAGGGCAACUAAGUUAUUUGGCUGCGCCGUUACCCACCGUUACGACUAAAAAUGGACGAAAUAAUGUGGAGGGCGUGAUAAAAUUUGAUGAUAGUAGAGAGAGAGGCUCAACUUUUUUUUAAUGGCACACCAUCUCACCAUCUGCCCUUUCUUAAUGGCAAACAAGGGAAAAACCUCCAACUCUGUGCUGUACAACGGCUAAAUAUUCGAGAAAACCCCUCAUAUUAUUAUGAACUGAAACACAAACUUCGUCGGCAGCUGAGGCGCGAUGCGUGGCGGCGCGCCACAACUGGAGCGGCCCUCCCCUGAGCCUGAGGGGCAGAGGUGGGCUAGCUGGAGCCUGGAGGUGGCAGCGGCCGCCGCGCACUCGCAACUACUCACAAGCCGCCUCGGCCCCCUAAUCUUCCGCGAGAAGAACGCGGAGUAGCAGCAGCAGAGGCGUGCGGGGUCGGUGGACUCGGUGCUAACGGAGCAACCUUUCUGCUGGUGAUAAGAGCAUAAGACCUCUUCUCCUGUGAGCAGAAGCAAAGCACCGGGGAUUGAUUCUGGCACAGGCAUAUAAUGCAGUAAUAUGCCUCAAGACAGAUCAUCUCCUUUCGGUGCUUUGAAAUUUUUUCGCCAACCAGCAGAAGCAAGCCAUUUGAUUGGGAACUCCAUCAAAACAAUGACAAGAAGAUUCUGGUCCUCACAUCAUGGGAGCACUAAGCUAUGUCACUGUCACUAUUCUGGAAAUUUCUCAAGGUAUUUGAUAGCUAUCGCGAUUUCUGUAGGCCUUCCAGACUCUGUUGGAGGAGUUUUAUCAGGACCUGUGUCAAAUGUGGCAACAAGGUGGUACUUUGGUAUUUGGUAGAAAUUUAUAUUGAAAUGAUGGGGGAGGAUCGGCAUUCUAAUUUGGGCUGUGUUUAGUUCGUGUGCCAAAUUUUUUUUGAAGUAUACGGACACACAUUUGAAGUAUUAAACGUAGACUAAUAACAAAACAAAUUACAGAUUCCGCCUGUAAACUGCGAGACGAAUCUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

314

LEP:

63.82%

ME_num:

177

MEP:

35.98%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.64

Avg Expression:

2.13

Tip: OSA-PHAS107278413 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.286867825718570.0137684750123306