Chr:
Chr3
Start:
10233009
End:
10235047
Strand:
-
Ref_name:
LOC107278365
Sequence
(XM_015774916.2):
CAUAUGAUUAAUUGAGUAUUAACUAUUUUAAAUUGCAAAAAUAGAUUAAUAUGAUUUUUUAAAGCAACUUUCCUAUAGAAAAUUUUUGCAAAAAACACACCGUUUAGUAGUUUGGGAAGCGUGCGCUCGGAAAAAGACGUGCUAUCUCACUCAUUGUCCAUGGAACGAACGCAUACUCUCCUUUUGAUGUCACUGGUGCAGCGCGCAAAGCCCGCGUUUGACUCUAGUCUGGUUUAAGAGAUGUAGUUUGCAACUACGAAGAACCAACGGGAGGGUCAAGCUGUCAGGGUUAAAUAGCUGGAAAAACAAGAAAACGGGGAAAAUGAGAAAUGACUGGCAUAAAACGAAGUAAAAAGUACGAAUUACCCCCUUGAACUAUCGUGACUGUUCGAAUUACCCCCCUGAACCACAAAACCGGACAUUCUUCACCCCCAACUAUGUAAACCGGACGAAUUACCCUUCGACUCAAUCUACAGUGGUUUUGUUCUACGUGGCAGUCCAGUUAGCAUUUUAUUUUUUUAAUGGUGGGACCCAUGUGUCAGACUCCACUUUCUCUCUUCCUCUAUCUCUCUCUCUUCAUCGGUCAGCGGCGCGCACGUUGGCGGCCAGCACGCAUGGCGUGGCGCGGGGAAGGGCGAUGGGUAGCGACGCAGGGGCAUGCUGGCGGUUGGCGCGCACGCGGCGCGCGGGGAGGUGGAGGGGAUGGGGGACAAGCGGGCGCCAACGGCCAUGGCGGAGAGGCGAGCCAUGGCCGGAAGCAUCGGGAGGAGGAUGGGGGACGGCGGACGGAGGCGCGCGUCAGGAGCUGGAGCGGCGUCGGGAGGAGGACGGGGAGGAGCAAGAGAGGCGGAAGAGGGAAGCGGCGGCGGAGGAGGAGGCCGUUCCCGCGACCGCCGCUCGCCAUUUCCUUUGCGCCCACCUUCUGUCCCGGCGGCCUCCCGCCUCAGGUCGCGCCCUCGUAGCCUACCGGUUGCCCGUCGCACGGAGGGGCGGGCGGCGGACGGUGACGCCCGGGGGCGGACAGUGGAUGGCGGCGCGUGGGAGCGGGCGGUGGGCGCCGGACGGCGACGCGCGGAGGCAGGCGGUCCCGCGCCUUGAGACGCUCAACCAGGGCGUCCACCACGUCCCCGAUGCUGACCACCUGCUGGUGCCUAGCGGCGGCGCCGCCAUUGUUGGCAUGGCGGAGCAGCUGCGUGGGCGAUGCGGACGCCGCCAUCACCGGGGAGGUGGGGACUGGGAACGGCACGGCGCGGUUGACGCCGUGGCGGGCAUGGCGCUCGCUGAUGGCGACGGUGAGGCAGCGACGCGGGAAGAGCGUGGCGAGCAGUUCCCCGUGAAAAUGAUGACGCUCUUGCACCUGGAGAAGGAGACCGGGGAGCAGCAUACGUAGGUGGUCUCUACGAGCUGUACGCGACGUUGCCGCCAUGCGGAGAAGGAGGAGGGGGCUAGAGAUGGCCUUAUUCUUCAUAUGCUGUAGCUGGACGAGCGGUAUUAGUCGAUGCAGUCCUCCGAGUCGUAGGCGAGCUCGCGGAGCUGCUUCAUCCACUCUAGGACGAAGUGGUCCACGUUGUUUACGAGGUUCUAAGCCGCAUUCUGCAUGCUUUGAUCUUGGUUGGCUGGAAGCUAGUUUGGCGGCCGUGGCGGAGACGCGGACGGUGGCUGGAGGCGGCGGCGAGGCGGGGCCGUGGCGGAGAGGCAGGCGGCGAGGCGCGCCGACCCAGCUCCGGCCAUGGGCGCCGCUGUCCGCGCCGACUGCCACCGGAGCUUGACGAGCUCAUCGACCCGCCGCCGACUCCCACCACCCGCCCCCGCACGGCGCUGUGCGCGCCGACCGCCCUGAGCCCGACGGCGCGAGAGAGUGGGGGAGAGAGAAACAUGAGAUAGAUAAAGUAUAUAUAUGACAGGUGGGCCUCACAAUAAAAUGCUGACUUGAUUGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.93%
ME_num:
MEP:
41.46%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.74
Avg Expression:
1.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.10199007638414 | 0.0185156591643403 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.03002376475914 | 0.00975386633718538 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.19559716002267 | 0.00176665700121601 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.70050421755813 | 2.2787713026831e-05 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.33795168353667 | 0.00305112253972461 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.43304988618944 | 0.000175041429276558 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.08351146053778 | 0.00110046119335374 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.539461791424 | 0.0035783444917851 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.18963649997302 | 8.22293786344554e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.44449536738319 | 0.000185607960372516 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.13924989654554 | 0.0011001334245453 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.54864268219702 | 5.87918015529458e-07 |