Chr:
Chr2
Start:
34008166
End:
34014806
Strand:
-
Ref_name:
LOC107277566
Sequence
(XM_026023109.1):
AUGGUCACCACGGCGUCCAGACGGAGCACCCCAGGGGUGUUCAUCGGCUACGCGGAGGGCUCGAAGGCCUACCGCAUCCUCGACCCGGAGACACAGCGUGUGCGCAUUACGCGCGAUGUUGUGUUCGACGAAGGGCGAGGGUGGGUAUGGGACAAGGCGGUGGAUGAUGGUUCGACUCCGACGUACGACGACUUCACCAUCGAGUACGUCCACUUCGAGGGAGCUGGGGGAGUAGGCAGCUCUUCUUCACCGAGCGUGUCUACCCCAGUCCCCGAGCCUCCACCGACUCCAACACCAACACACCCUCGGGCCACGACUUCGACUACGACGAGCUCUUCGUCGACACCACCCCAGCCGGUGUCCCCACACGCUCCAGCACCAACAGCCACUCCUCCGGGCACGUCUACUCCGACGCCAGCUCGUGUUGAGCGCAGCCCGGUGGAGUUCGUUACUCCGCUCUCCCACGACGGGGAGCGCAUCGACGCGUACCAUGACGGCGAGCAGCUACGGUACCGUACGAUGGAGGAUCUUCUCGGCGACCAGCCGGUGCCGGGACUGGUGCCUCGCAACCUGGAGGCGCAGUUGCACCUUGCGUGCGACGACGAUUCUAACAGUAAGGGAAUCAGCCAGUAUGACCUCCUUAAGUUUGGCCGAGGAUUCAUGAAACUGCAAAGGUUUGAGUAUGAGAUCAACAGAAAUUACUGGUCAUCGGCAGCCCGUGAUCCUGCCUAUGUUGCUCACUACCCAUACAGGUACGAUAUCUGCUGUGAAAAUAUGAAGGAACUGAGGUUGGCGCAUAUUGUAACUAAGCCAGAGAUAGGACUCCGUUUUCUCUUGGGGAAAUGCAGAGCAUUGGAGAAACUUUGGCUGGAGUAUGUCAUUGGUCUAACUGACAACGAUGUGAUUGCACUAUUCCAGAACUGCGGCAACCUCAGAAGCCUCUCGUUAAGGCUCAUUCCUCUGUUGUGUCAUGCUAUUUAUUUUCGGACAGCAUUGACCAAUGACAGCCUUAAGGCCCUGGCUCUCUACUGCCCUAUGCUUCAGGUUCUUGAGCUCACCUUUACAUUUUGUUCCGAGGACUAUCCGUCAGAAGUAGGCUUUUCACAGGAGGGUAUUGUAAACCUCGUUCAGUCCUGUCCAAUUCGUGUUCUCAUGCUUAAUGGUGCCAGCAAUUUUGACGACGAGGGAAUGAAGGGCCUGUCAUCCUCAAGAUCCCUGGAGACACUCGAGCUUGUGGAUUGCAUGUUUAUAGGGGAUUUAGGCAUGCGUUCCAUCGCGCGCACCCCGAACUUGCGGAAUCUAACACUCCGGAAGUGUGUUUGUGUGACUGACAAUGGAGUGUCUGAGCUGGUGCAUGCACAGAACUUGGAAUCCCUGACCAUUAUAGGUUGCCAUCGGAUCUCUCUGAAAGCUGUGCAGGGGGCUGCCAGAUCAGUUUACUACUCAGCUGAGUCUGAAAAACAUGAGAGUCUGAAAGGAAUGAAGAUGACAAGGUCUUCAAAGUGAUGUUUGGCUGUCAAUGUUUCUUGCUAUAUGUUACCUGAUGUUAAUUUCUGACUACUUUCUAUAGAUGACAUGGUUUCUUAAACUGUCCAAAUAUUGCAGUUUAUCCAAUUGUGACUGGAUCCAGCUAGCGGCAACAUUGUUCCAGCUAAUGGUAAUGAUUCAGUACUCAAGGUCUCACUGUCACAAAUAACCAACAUGGGCAGGUAUUUGGAGACCUGCAUUCUUCACUUACGUUUCACCUUUUUUGCCCGCUAUUUGAUUGGAUGGUGUUUGCAUUUUUCUCUUCGGUACAACAUUCCCAUACUUACAAUGAUCCAUAUUGUUUAUACCGCUGUGGUGCUGCCCUUGUGUGUGCUUAAUUUUUGUAGAGACCAGCUGACUGACGUUCCAUCUAUACUAUUUUUACUGCUGCAGGAUAUGAUAUCCAUGUAUGUUUUUUUUUUCACCUUUAGUUUUUAGAUAGCUUCUGAUUAAAUGUUACAUCUACUGCUAUUUCCCGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.03%
ME_num:
MEP:
97.36%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.71
Avg Expression:
13.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.72611023472906 | 2.43014429655437e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.18307650302302 | 2.47899826642457e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.46474279820296 | 3.14917461815844e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.02902299370013 | 0.00038167250080073 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.0763507159997 | 0.000127362371980868 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.49594402741036 | 1.55722014973721e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.30329678013212 | 1.23144499413301e-19 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.70333651913289 | 3.67716851299174e-11 |
| 9 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.21428012784459 | 0.000236422754487726 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.81988921560703 | 1.71398321758952e-12 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.12521488833554 | 1.47458765059152e-20 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.42783118745713 | 0.0151630141400018 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.42774721664538 | 0.0154950814547567 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.42767033031871 | 0.0152171337548473 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.27589301081907 | 5.04741233479398e-08 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.56257717845742 | 1.03127199069284e-19 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.09245417010982 | 2.40589679349011e-11 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.26543373200986 | 0.0392993688416863 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.46757637469315 | 1.89795308503917e-17 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.74571142199047 | 1.80397979850879e-25 |