Chr:
Chr11
Start:
19475587
End:
19479407
Strand:
+
Ref_name:
LOC107277021
Sequence
(XM_015761051.2):
UCUUCACCGCCCACGUGUCCACACCUGAGAAAGCCUCCUCCCCCUCCACCACCGCCGCGUUCGUCGCCACCGACCACCGUCGCUAUCCAAGAAGAAUAGACGACGACGACCACCCCGGAAACCGAGCUCCCACUCGCGGUGAGGUCACCAAUGGCGGACUCCCUCCUCCUCCUCGCCUGCCACCUCCUCCUCUCCCUCGCCCUCCUCGCCGCCUCCCUCUCCCACCUCCUCCUCGCCGCCACCACCCACCUCUCCCCUUCCUCCUCCCACCUCCGCCGCCUCCGCCACCCUCUCCUCCGCCUCCUCCCCGUCCUCCUCGCUCUCCCCUUCCCCUUCCUCCCCGUCUCCCCCACCGCCGCCGCCGCCCUCCUCCUCCUCCCGCCCCUCCUCCUCCCGCUCCCGCUCCCCUUCCUCCCCCACCUCCCCCACCUCCGCCCCCUCCUCCUCUCCCUCCCCCUCCUCCUCCUCGCCCGCGCCGCCUCCCUCGUCGCCGCCUCCUUCCCGCCCUCCGACCUCCAGUCCCACGCGCUCCACGUCGCCGCGGCCCUCCUCCUCGCCGCGGCCGUCGCCUCGCUGCUCGCCGCGAUCUCCCCCCCGAACCGCGGGCUCCUCGCCGAGACCGCGCUCGCCUGCGCCGGCGCCGUGGGUGGCCUCUGGGUGGGGCAGAGCGGCCUCGUCCUCUACGUCGACGCCUGCGUCCCCGCCGGGUGCCACCGCCUCAUGGACGCCGCCGUGGCCACGCCCGCCACGCGGUGCGACGUCGAGGAGGCCAGGCUCCGCGCCGUGGCGCUCAUGGACCUCGCGCUGUCCGUGCACUGCGUGGUCGUCGCGGCGGUGGCCGUGGGAGUGCACCUCGGGGUGGCUUGGUGGUGCGGGGUGGACGGCGGCGCCGGGGCGGGGAUGGGGACAGGGAGGAGGCAUAAUGGCGUCGGUGGGUCGUACGAUGCAAUGCCCACGGUGGCGUCUGCCGAGGCGGAGAUGGAACAUUUGCCGAUGAAGGGCGUCGUCGGCAAGAGCAUUGCGCAGGAAUAAGAUUGUGUUGCUUCAAUUGUGCUUGAUUAAGCAGUGGCGGAGCUGGACAGAAAAUCAAAGGGGGGCCAGCCGGCUUUUGACAGUUCAAAAAAUUAGCAAUUUCUCUUUUUUUUCAUGCAUUGGCAAUACAUAAAAGCGAAUAGUUUGCAAAAGUCGACGACAAAGAUCAGCUACAGAUGUCAGAUUUUGAAAUUUAGGAUUGGUGGGUACAUCAAGUUCAUAGUGACGUAAUUGACAUCUCAAAUUGGCUCUCUUGUUCUAAAAAAUCAGCAGGAUAGAACUUUGAAGCUAGAGAGCACACUUUAUCAAUGUUGAAUGAACUGAAUGAAUCACUUGGAUCCAAAGACGUACACAAAUUGAGAAGCUCUAUUGCUUGUUCACUGAAUCUGCUAUGAUAUAUGGGGGUAAUAAAAAAAUUGUUUUUAUUGGGAGGGGCCAUGGCCCCUGCCAGCCCCCCCUCAGUUCCGCCACUGGUUUCAGGUUACAAGACGUUUUGACUUUGGUCAAAGUCAAACUGUUUCAAAUUUAACUAAGUUUAUAGACAAAUGUAGUAAUAUUCAUAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
43.09%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.75
Avg Expression:
4.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.88483986056396 | 0.0299509683618233 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.64319496054646 | 0.0167896964448143 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.75925239860818 | 0.0296268455076213 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.75006296351356 | 0.0262187416442258 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.31709592150133 | 0.000435643849565443 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.08379381587533 | 0.00792828109256099 |