Chr:
Chr1
Start:
5578738
End:
5585341
Strand:
-
Ref_name:
LOC107276816
Sequence
(XM_015775384.2):
CUACUCUCUCUCUUCUCCUCUCCCCCUCAAUCACGACUUGGGUAGAUUUGCGGUGGCCAGAUCGGAGCACAUCCAUGGCGGUCGUCGCCGCUUUCUCCAUCAGGGAGUACACGGCAAGCAUAAGGGGAGCGGCGGGGGCAGAAGGGAGGAGGCUAUACGGCCUCGGUGCGGGGGAUCUGCCGCCGAUGGAGGCGAGGAGGUUCCGGUGGUGGGCAGACGAGCUGGCCACGGCGCCGCCCCUUCCUCCCUGGUCGCUGUCCCCAUCCCCGUCCCCGCCGCCGCCGCCAACGAAGCCGUCAAGGAGGACGCUGGGGAAGGCGAGGGCGCCGAAGAAGCGGUCCAUAUCGGAUCUGUUCGCGGCGGCGCCUCCCCUCGCGCUUCCCUCCUCCGAUUCGGGCGGCGGCGGGAACGACAACGACGACGAUGAGGCGCUCUGCGCGAUCAUGCGGCGAGCUAGGGAGAAGAAGCGGAAGCGGAGGCUGCAGGAGGAGGAGGAGGAGGAGGCGGGGGCUGCUUCUGCUUCGGUGACGGCGGCGGCAGCGGCAGAGACGUGUGAUUCCGAGGGAAACUUCACUAUAAAGGAAGCACUUGACAAGACAAAUUUGCCUGGUGGAUUGGAUACUCCUCAAGCGUCAAGGAGACCUGAUGGUGUACACCAUGCAAGAACAGACGAGGAAAGGUCUCCAGACUCAAAGAGAAGGAAGAAGGUAAAGAUCACUAACUUAGAUAAGAACAACAACAAGAAGAUUGAUAAGAAAAGGUACAGCGAGAGUAAAAGCGCUACCAACAAGGUGGGGAAACAGCAUGACCUGAAGAAAAUGCUCCCUUUGCAUAGUAUUCUGAAGAAAUACACAAGGCACACAUCUGUCAAAAUGGUCAAGGAGAAACAUGGCGACCCAAAAGGCACAGAAGUCAUUGAAGUCUGCCGCAAAUCGGUGAAGCGUGUAAAAUUCUCAGAAGUUGAUGAUGUGCUUGGUAUUAACAAGCAAAAUAUCUGCAAGCUGUUCUCGGAUGCUUUGGCGUCAUCGUCGUCAUCAUCCACGGACAUGUCCAGUGAAGGGGACAAGCACAUAGCUGCAGAAAGCUGUAGUUCUCAUAUGCCGGAGACAGCAACUAAAGAAGCAAGCAAGAGUACAGAUCAUGAGGAUUCUCUUGAGCUCACCAGCACACAGUUGUCCUCCAAUUUGUUUGAUCUGAAUGAGGCACUGCCAGAAUCUACUGAUUUGAACUACCCAUAUGUGUCAAAUCCAGAGGAUCCAAAUCAUGAGCCUAGACAGCAUGAGCCUUUAGACUCUGAUGUGCAAGUUAUUGACGAGGGACGACAAAACCAGCAGGAUCUGUCUUUGGAUUCACAUGGACUUCAAUGUCAGUCCGUUCCUGAGUCUGGGUUAGAAAGAGCUAGAAGUUCAAUAUCGCCAGGCACAUUUUUGCACGGUGAGUUCAUGGAAGUGUCUGACACAUUUUUUGUUGGUUCUUCACGGAAGUUGACAGGAGAACUUGCUGAGUCUCAUGGUGAUUAUGCCUUCAAUCUGAAUCUUGGAGGCAGCCAGCCCUCCAAUGAAGGAGAAGUUCCUCCCCAAGAUUGUAAUGCAUCAACUGGAGUGGCUUCAAGUUCUCAUUCUGAAAUGGGUGUGCAGCAGGAGUGUAGGCCUGCUGCUGGACAAACUGUGCGUCUAAUGGGCAAAGAUCUCUCAGUAUCUACAACCAGAGGAGAGUAUGUGUCUGGGACACAUUUCUAUACUGAAGACCAUCCCACAAAGUUGUUCUUGGAAUUGCCGCGACAAGGACGGCCUUAUCUCUCUUUACAAGCUCAAAGUGUGCCCAAUGUUUCAGCAAAUUCUGCAAGCCCAAGUCAAUCACAUAUCAGGUACACUGCCCCUCAGAAUUUGAGCCACUCAUUCCCCACGACCAAUGCAUUAUCUGGAGAUCGAUUGCGAUACGACGAUCGAUUCAGCUACUUGUCAGGCUCACAGCACCAUGGAAAUGUUCUGCUGGGGAGUCCAUCUCUUACAAGUGAUGCUAAUUUGCCUCGGUCAUAUGGUGUGGUCUCAGCUGGAUCAUCGGUUCACCCCCACAACUCUCCAAGCUUUGCAUUCACUCAUCCAAGACGGAUGAUAGUUGAAGAAGCUUCUGGCAGCAGAAGAGAUGCAGCAUGUCCAUCUAGAAAUGCAGAAAAUGUUGCUGCAAGAGCUGCCAUUCCUGAAAUGCAAGCGCAAAGAACUGGUCUGAUGAAGCUCACUCCUGGGGCCAAGCAUAUCCUGAUGCCGAGUGACACCACAGGGGACGGCACCUCCAUGCCAGUGUACUCCUGUGUUUCUUUCGGGAGUAGGAGAGGAAAUGCUUCAGCAACUCGCAACAUGGGAGCCGAGCUGUACAAGUUAUAGUCCAAAUAAUGCUUAAACUUGGGCAUGUUCUUCCUGAGCUGUUGCGGAGGAGUAAGCUGUAGGUUGAAGGAGUUGAGAAGAUAGUGGAGAAGCGAUAGAUCGUGCAUGCACGGAUAGCAAGAAGCAACAGAUCGAUCGAGAUGACUUUGUGGAUCAGAAUGCAAGACUUUCAGAGCCGUCCCUAGCUUAGAAAUCUUGCAGCAUUUAAUUUCGUUCUUUGCUUAAGAGAGAUGACAAAAAUGCAUGCUCGAAUGUAAAGGAUAUGUGUUUGUUUGUUUGUUUUUGUUAAAUCUUAUACUUGGAGAAUUGAGGUAGUGUUUGAUCUAGCUAUAGUGGGUAAAGGCUUGUCAAAAAAGUUGGUCGUGUCUGUACAAUGGGGUGUGGCAUCAAGAUCAUGCCUAAAGGAAGGUUAUGUGCCUUUUCGCACCUUACCAAAUGUCACUUUUGGAUGUGGUUAUGUGAGUGGAUGGGAUUAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.54%
ME_num:
MEP:
89.02%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.80
Avg Expression:
15.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.98006391582268 | 0.00561070245759673 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.16191543203347 | 0.0122114393415048 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.44989108359585 | 0.026946448725395 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.70714342540687 | 0.00253611292603409 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.27591225230202 | 0.0240608065950177 |