OSA-PHAS107276816


Function Link


Basic Info

Chr:

Chr1

Start:

5578738

End:

5585341

Strand:

-

Ref_name:

LOC107276816

Sequence
(XM_015775384.2):

CUACUCUCUCUCUUCUCCUCUCCCCCUCAAUCACGACUUGGGUAGAUUUGCGGUGGCCAGAUCGGAGCACAUCCAUGGCGGUCGUCGCCGCUUUCUCCAUCAGGGAGUACACGGCAAGCAUAAGGGGAGCGGCGGGGGCAGAAGGGAGGAGGCUAUACGGCCUCGGUGCGGGGGAUCUGCCGCCGAUGGAGGCGAGGAGGUUCCGGUGGUGGGCAGACGAGCUGGCCACGGCGCCGCCCCUUCCUCCCUGGUCGCUGUCCCCAUCCCCGUCCCCGCCGCCGCCGCCAACGAAGCCGUCAAGGAGGACGCUGGGGAAGGCGAGGGCGCCGAAGAAGCGGUCCAUAUCGGAUCUGUUCGCGGCGGCGCCUCCCCUCGCGCUUCCCUCCUCCGAUUCGGGCGGCGGCGGGAACGACAACGACGACGAUGAGGCGCUCUGCGCGAUCAUGCGGCGAGCUAGGGAGAAGAAGCGGAAGCGGAGGCUGCAGGAGGAGGAGGAGGAGGAGGCGGGGGCUGCUUCUGCUUCGGUGACGGCGGCGGCAGCGGCAGAGACGUGUGAUUCCGAGGGAAACUUCACUAUAAAGGAAGCACUUGACAAGACAAAUUUGCCUGGUGGAUUGGAUACUCCUCAAGCGUCAAGGAGACCUGAUGGUGUACACCAUGCAAGAACAGACGAGGAAAGGUCUCCAGACUCAAAGAGAAGGAAGAAGGUAAAGAUCACUAACUUAGAUAAGAACAACAACAAGAAGAUUGAUAAGAAAAGGUACAGCGAGAGUAAAAGCGCUACCAACAAGGUGGGGAAACAGCAUGACCUGAAGAAAAUGCUCCCUUUGCAUAGUAUUCUGAAGAAAUACACAAGGCACACAUCUGUCAAAAUGGUCAAGGAGAAACAUGGCGACCCAAAAGGCACAGAAGUCAUUGAAGUCUGCCGCAAAUCGGUGAAGCGUGUAAAAUUCUCAGAAGUUGAUGAUGUGCUUGGUAUUAACAAGCAAAAUAUCUGCAAGCUGUUCUCGGAUGCUUUGGCGUCAUCGUCGUCAUCAUCCACGGACAUGUCCAGUGAAGGGGACAAGCACAUAGCUGCAGAAAGCUGUAGUUCUCAUAUGCCGGAGACAGCAACUAAAGAAGCAAGCAAGAGUACAGAUCAUGAGGAUUCUCUUGAGCUCACCAGCACACAGUUGUCCUCCAAUUUGUUUGAUCUGAAUGAGGCACUGCCAGAAUCUACUGAUUUGAACUACCCAUAUGUGUCAAAUCCAGAGGAUCCAAAUCAUGAGCCUAGACAGCAUGAGCCUUUAGACUCUGAUGUGCAAGUUAUUGACGAGGGACGACAAAACCAGCAGGAUCUGUCUUUGGAUUCACAUGGACUUCAAUGUCAGUCCGUUCCUGAGUCUGGGUUAGAAAGAGCUAGAAGUUCAAUAUCGCCAGGCACAUUUUUGCACGGUGAGUUCAUGGAAGUGUCUGACACAUUUUUUGUUGGUUCUUCACGGAAGUUGACAGGAGAACUUGCUGAGUCUCAUGGUGAUUAUGCCUUCAAUCUGAAUCUUGGAGGCAGCCAGCCCUCCAAUGAAGGAGAAGUUCCUCCCCAAGAUUGUAAUGCAUCAACUGGAGUGGCUUCAAGUUCUCAUUCUGAAAUGGGUGUGCAGCAGGAGUGUAGGCCUGCUGCUGGACAAACUGUGCGUCUAAUGGGCAAAGAUCUCUCAGUAUCUACAACCAGAGGAGAGUAUGUGUCUGGGACACAUUUCUAUACUGAAGACCAUCCCACAAAGUUGUUCUUGGAAUUGCCGCGACAAGGACGGCCUUAUCUCUCUUUACAAGCUCAAAGUGUGCCCAAUGUUUCAGCAAAUUCUGCAAGCCCAAGUCAAUCACAUAUCAGGUACACUGCCCCUCAGAAUUUGAGCCACUCAUUCCCCACGACCAAUGCAUUAUCUGGAGAUCGAUUGCGAUACGACGAUCGAUUCAGCUACUUGUCAGGCUCACAGCACCAUGGAAAUGUUCUGCUGGGGAGUCCAUCUCUUACAAGUGAUGCUAAUUUGCCUCGGUCAUAUGGUGUGGUCUCAGCUGGAUCAUCGGUUCACCCCCACAACUCUCCAAGCUUUGCAUUCACUCAUCCAAGACGGAUGAUAGUUGAAGAAGCUUCUGGCAGCAGAAGAGAUGCAGCAUGUCCAUCUAGAAAUGCAGAAAAUGUUGCUGCAAGAGCUGCCAUUCCUGAAAUGCAAGCGCAAAGAACUGGUCUGAUGAAGCUCACUCCUGGGGCCAAGCAUAUCCUGAUGCCGAGUGACACCACAGGGGACGGCACCUCCAUGCCAGUGUACUCCUGUGUUUCUUUCGGGAGUAGGAGAGGAAAUGCUUCAGCAACUCGCAACAUGGGAGCCGAGCUGUACAAGUUAUAGUCCAAAUAAUGCUUAAACUUGGGCAUGUUCUUCCUGAGCUGUUGCGGAGGAGUAAGCUGUAGGUUGAAGGAGUUGAGAAGAUAGUGGAGAAGCGAUAGAUCGUGCAUGCACGGAUAGCAAGAAGCAACAGAUCGAUCGAGAUGACUUUGUGGAUCAGAAUGCAAGACUUUCAGAGCCGUCCCUAGCUUAGAAAUCUUGCAGCAUUUAAUUUCGUUCUUUGCUUAAGAGAGAUGACAAAAAUGCAUGCUCGAAUGUAAAGGAUAUGUGUUUGUUUGUUUGUUUUUGUUAAAUCUUAUACUUGGAGAAUUGAGGUAGUGUUUGAUCUAGCUAUAGUGGGUAAAGGCUUGUCAAAAAAGUUGGUCGUGUCUGUACAAUGGGGUGUGGCAUCAAGAUCAUGCCUAAAGGAAGGUUAUGUGCCUUUUCGCACCUUACCAAAUGUCACUUUUGGAUGUGGUUAUGUGAGUGGAUGGGAUUAGA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

42

LEP:

8.54%

ME_num:

438

MEP:

89.02%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.80

Avg Expression:

15.08

Tip: OSA-PHAS107276816 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-3.980063915822680.00561070245759673
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-4.161915432033470.0122114393415048
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-3.449891083595850.026946448725395
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.707143425406870.00253611292603409
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.275912252302020.0240608065950177