RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107276571

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

3284894

End:

3288196

Strand:

+

Ref_name:

LOC107276571

Sequence
(XM_015792012.2):

CUUCUGGACCUAGAGUCCCAAUUUACUUAAAUUCAUUCAAUCUCCCCGUCUUCUCGGCCGCCGACUCCCGUCUCCUCGCCCGCCGCCUGAGCCGAUCUCCAUCGUGCGAGCAGCGUCGCCGGUGUCCCCUUGCUGCUUCCGCCGUUCUUCUGUAAAUCCAGCCUACCCUGAGAUUUGAUUUGAACAUGACGAGAAAACCAGAGGAAUCCUUGGAUUGCGCAGCUAAGAACAGACAAGGGAGAAGAUCAGGCCUCCAACUUAACGAUCUUCCCAUAGAUGUUUUGGGCUUGAUCAUAUCGCGGCUGCCAAUUGGAGAUGCUAUAAGGACUGGACUUAUAUCAAGGCAAUGGAAGGAUCUUUGGCGUGAUCAUACUAUGCUAACAUUCAGUCGCGCCACAUUUCCUAGUUGCAGAAUGCUUAACCAGCAAAAUUUCAUAAGGAGAGUUGAUUCAAUCCUGCAGCAACAUAGUGGUGUAGGCGUUGAGCGCAUGGAGAUCAAGUUCUUAUUGCGCAAUGCGCGGCGGGACAUAGAUAGAUGGGUGAAAUUUGCCGUCGCAUCCAAGACGAAAGAACUCAUUCUUGAUCUAUCAGAUCUUACUAGGUUCUUCAUGUUGCCAGUUAUGGUAUUUCACCCAUAUCUAGACAGAGAAGGAUUUUAUGAGUUUCCUUGUCAGCUUCUUGAUGCCAACAAUGGUGGAUCUCAUUUGCAGUGUCUGCAGCUUACCUCUAUGUAUCUGAAACCGGCUGCUGAUUUCACUGGAUUUCUGAACCUUAAAAGGCUUAACCUGAUAGGUGUAAAUAUCACAGAUGAAGGGGUUCAGAAUUUGCUGUGCAAUCCCAAUGUCCUGGAGUUCCUUGAGAUCUCCUUCUGCAGAAUGCUCACAAAGAUUCAUGCACCUCAUUUUCUGAACCGGCUGAAGCAUCUGCAAGUGGAUUGUUGCCCUGUACUUGAGAAGAUAGAGAUGAACUGUGAUCUGGCAACACUUGAUUUCACUGGUUCAUCAAUGACACCUUUGAUUUUUGCUACAACUUCCAGCCUGACAAAUGUGCGUUUAAAAACGAUGCCUUUUUGUACUGGUCUUGACUAUAUUGUCACAGGAUUCAUCAGUAAUUUGCCGGUUGUUCGAAUGCUCGAAUUUCAUGUUGUUGAAUAUAAGAAAGCUAUUUCUCCUCAGAGGCUUCCCAAAUUAAUUUAUCUUCGACAUUUGAAGUUGGAAACGAUUGUUUUUGGAUAUGGCAGGAAGACUGAUAUCCUUGACUAUGCAUAUCUUUUAGAAAUUGCUCCUUUUAUGGAAAAACUGGAACUACAUAUGUGGAUAGACGCUCCUCACAAACCAUACAGUGAAGAGGAUGGUGAUCUAAGAAGCCUUCCAUUACACCAUCACAAUAAUCUCAAACAGGUUCAGAUCACUGGAAUUUUCGGUCAGAAAGAUCAGGUAGAGCUGGCACUUCAUAUCCUUUGCAGCUCAACCGUGCUCAAGAACAUGGUGAUAAAUCCAGAAAUUGCAAUAGUGCCUCACGAUGCUUAUCGACCGCCAAAAAGAGGGGCACACAAUUUUGUGGAUGGUCGUGACGCCGCUAUGGAGUUUGUUUGCAAAGCUGACCAUCGAAACGUCGUCGAAGUUGUAUGAGCAUCAUAUAAGAUGGAGUCGAUUAAAAAAUAUAUAUAUGUAUUUAAAUUUUGAGUAAAUUUCACAGAACUACAUGUUUUAUAGUUCAAGUUGCAGAAAACCACAAACAUUUUGACACUUGGCACUUAAGUAUAUAUAUUUUGGUAGUUUAGUUUCACAAAACCACACUAUCGAUGAAUGGAUUCAUCCAUGAGACGACGUGGUCGUUCCAUCUAGGAUGAGGACGUGGCAUCCUAUUAAUUUCGUGCGAUGGCUGGUAAUAGGAUGGCAUGUCCUUGUCCUAGAUGAAACAGUCACGUCAUCUCGUGGGUGAAUCUAUUCAUUGAUAGUGUGGUUUUGUGAAACUACACUACCAAAAUAUAUGUACUUAAGUGCCAAGUGUCGAAGUGUGUGUGGUUUUCUGCAACUUGGACUACAAAACGUGUAGUUUUGUGAAAUUUACUCUUAAAUUUUUGGUGAAAAGAAAAGGUUUGUUCUCUUUGAAACAAAAAGGUUUAAUUCUGCAUGAAAUAGGGAAAAAAUGUGUGUUCUCUUGAAUUGGACAUGGCCAUUGUCUAAACAGAUACUUGGAGAUUGACAGGUGAUGUCACAUGUUCGCCUUGGGUGUAUCAGUUGGACCAGAGACAUGGAGGAUUAGGGCCUCAAUUUUUUUUCAUAUUUUAAUCAAUUCUAAUGUGUAUCUUAAUAAGUUCUAAUGCAUUCCAACAUGUUUAAAAACCUCUCAUUCUAUUUUAAAUGAGUUUUGCACUUUUGCUCUUCCCCCUUUACC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

456

LEP:

92.68%

ME_num:

35

MEP:

7.11%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.92

Avg Expression:

3.01

Tip: OSA-PHAS107276571 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2563.402766119777910.00480624528530951
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2792.910209631556090.0366215068787417
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_122.534563938496890.0304454350297765