Chr:
Chr12
Start:
6445930
End:
6450818
Strand:
+
Ref_name:
LOC107276166
Sequence
(XM_015763566.2):
AAAUGUACUUUCUCCCGUAUCUUAUAAACAUAAUGCGCGGCUAGGAUGCCCUAUGAUUGUCUUAAGAAUAAUUCCCGCAAAACCAAGGAAAAGAGAAAUCCAGGCAUUUCCGCGUAACAUCCUUUCAGAAAGGAAUAGUCUGCAGUCACGGCCCACAUGGAUACCAGAUACGGGUAGGCACUCUACCACUCAAAUUGUUCUUUGUACCCUUUUCAAGUCAAGUCAAACACUGAUAUAAUAUAAAACCCUGUUUAACCCAGCUUCGAAUCCAAAAUUUUAAAAAAUUGAUAUUCCUAGCUCCACAAAUAAUGUUUGCAUGCAUCAUUUUACUUCUACUUUAAAUAAAAUAUAAAAUUUCAAGUAACAAUAAUUUAACCGAGCCCAAUCAACAACUAUUGAUACCGACGACCGACUGAGACCGUAAGACACAACUCGUGCCAUAUAUAUCUCCCACAGUAUCCUAUGCAUCCCCUAAAGUUAAGAUAGGGUAGACAAAUAGAUGGACAUUUCGAUCUCCAAGCUGCCACCACUAAUUUUUAAGAAUUACAUUAACAAAACAAGAGCCCAAUAAAAAUACGAUAUUUUACAAGUUCAUUGUCAACACAAAUAUAGACAUAUUUUCGUAUUUGUUUCAAGUCUUUCAAAAAAGAAAAAGGUCCAAUUUACUCUCCGAACUAUUUCAUUAUAUCACUUAACCCCUAAACUAUUUUUUUCUCUUAUUACCCUCUAGAGUAUUUAAAAUGGUUGUAAUGUUACUUACAUUUCUCUUUGUUGUUUCUCUUUAUGCGAGUCAUAUUUUAAGUUUAAAUUUUGUAGACCCAUAGAUGAUACUAUUAUCAAAGUUCUAAAACAUUUUCAAAAAAUUUCAUGGCUAUUUGCUUGAGAUUUUAAACCUCUCUGUUUAAAUUUGUCUAACAACUGCUUCCAACCUAUGUAAAGAGUUAUUAAAAAAUACCAAAAAAAAUGUUGAGAGAUAAGUUAUAAUGCAUAUAUCAGUCCCACCAAAUUUCAUUGCAAAAUGUAACCUAUAUAUAGAGAGAAACGUAAAAGACAAGCACCGUUAAGGAUUAAGGUAAAUCAUUUUCAAUAAUUCGGGAUGUAAAAUGAGCCGAGAAACUGUUCAGGGGUUAAGUGCUCCGGCAAAAAAGUUUGAAGGGCGUAAAAUGGACUUUUUUUUUCUUAAAAUAAUGAUGAGGUUUCAAAAGUUAGACUAAAGCGGAUGUAUUCGAAACAACUAUAUUUUAAACUAGACAUAGUAAAUAAAAACAUGAGAGAUACCUGUGUUUUGUAUGCACGUAAUCGAAAACAAACCCAGCAAAUCUCCAGCCAUGAGAGCUGCUUACCGUCUCACGGCUAUGCUAGCCAUGCUACCAAUCCUCCUCGUUGAUAUCCAGCCCAUGGCGGCGCCGGUUCCGUGCCUUCCAGGCCAGGCCUCGGCGCUGCUCCAGCUGAAGCGAUCCUUUGACGCCACGGUCGGUGACUACUCCGCCGCGUUCCGGUCAUGGGCGGCGGCCGGCACAGACUGUUGCAGCUGGGAGGGCGUCCGCUGCGGCGGCGGCGGCGACGGCCGUGUCACCUCCCUCGACUUGCGCGGCCGGGAGCUGCAAGCCGAGAGCCUUGACGCCGCGCUGUUCGGCCUCACCUCGCUGGAGUACCUUGACAUCUCCAGGAACAAUUUCAGCAUGUCCCAGCUCCCAUCCACCGGGUUCGAGAAGCUCACCGAGCUCACCCACCUUGACCUCUCCGACACCAACUUCGCCGGCCGGGUACCCGCCGGCAUCGGCCGCCUCACCAGACUCUCCUACCUUGACCUGUCGACGGCAUUCGGUGAAGACGAGAUGGACGACGACGAAGAGAACAGUGUCAUGUACUAUUCCUCGGACGAAAUUUCACAACUCUGGGUGCCAAGCUUGGAGACCUUGCUCACCAAUCUCACCCGGCUAGAAGUGCUUCGGCUGGGCAUGGUGAACUUGUCCAGCAAUGGCGAACGGUGGUGCGACGCCAUGGCCAGGUUCUCUCCAAAUCUUCAGGUCAUUAGCAUGCCAUACUGCUCACUGUCCGGUCCCAUUUGCCGGUCACUCUCGUCCUUGCGAUCACUUUCAGUGAUAGAACUCCACUUCAAUCAGUUGUCUGGUCCAGUUCCUGAGUUCUUGGCUGCACUCUCUAACCUUACUGUUCUUCAGCUUUCAAAUAACAUGUUUGAAGGGGUGUUCCCUCCAAUCAUCUUGCAGCAUGAGAAACUAACGACUAUUAACCUCACCAAAAAUCUUGGGAUCUCCGGAAAUUUCCCUAAUUUCUCUGCUGACAGUAACUUACAGAGUUUAUCUGUCAGCAAAACCAACUUCUCAGGCACAAUUCCAAGUUCUAUCAGCAACCUCAAAUCUCUGAAGGAGCUGGAUCUUGGAGUUAGUGGUCUCUCUGGAGUGCUGCCAUCCUCCAUUGGUAAGCUGAAAUCCUUAUCUUUACUAGAGGUUUCUGGGUUAGAGCUAGUAGGAUCCAUGCCGUCAUGGAUCUCAAACCUGACUUCUCUUACUAUUCUCAAGUUCUUCAGUUGUGGCUUGUCCGGACCCAUACCAGCUUCCAUAGGGAACUUAACAAAACUGACAAAAUUGGCACUGUACAAUUGCCACUUUUCAGGGGAGAUACCUCCACAGAUCUUAAAUUUGACUCAUUUGCAAUCCCUCCUGCUCCAUUCAAACAAUUUUGUCGGCACAGUGGAACUAGCCUCAUACUCGAAAAUGCAAAAUCUUUCUGUGCUGAAUCUCUCAAAUAAUAAACUAGUUGUGAUGGAUGGUGAAAAUAGUUCUUCAGUAGUGCCCUACCCCAGUAUUAGCUUUUUACGACUAGCAUCAUGCAGUAUAUCUAGCUUCCCUAACAUCUUGCGGCAUCUCCAUGAGAUUGCUUUUCUUGAUCUUUCAUAUAACCAAAUCCAAGGAGCAAUACCUCAGUGGGCAUGGAAGACCUCGACCCAAGGCUUUGCCUUGUUCAACCUAUCACAUAAUAAGUUUACGAGUAUUGGAUCUCACCCUUUACUUCCUGUUUACAUUGAAUUCUUCGAUCUCAGUUUCAACAAUAUUGAAGGGGCAAUACCUAUACCAAAAGAAGGAAGUGUCACCCUUGAUUACUCCAACAACCGGUUCUCAUCUCUGCCUCUCAAUUUCUCUACUUACCUAACAAAAACUGUCUUUUUCAAGGCCUCCAAUAAUAGCAUAUCUGGAAACAUUCCACCAUCGAUCUGUGACGGGAUUAAGAGUUUACAACUCAUUGAUCUCUCUAACAACAAUUUGACUGGCUUAAUACCAUCGUGUCUGAUGGAGGAUGCAGAUGCACUGCAGGUGCUAAGUCUAAAGGAUAAUCAUCUUACCGGCGAGUUACCUGGUAAUAUCAAGGAAGGUUGUGCAUUAAGUGCAUUAGUUUUCAGCGGCAAUUCGAUUCAAGGACAGCUACCAAGAUCUUUGGUUGCUUGCAGGAAUCUGGAGAUCCUUGACAUUGGCAACAAUAAAAUUAGUGACUCUUUCCCAUGUUGGAUGAGUAAACUUCCUCAACUUCAAGUCCUGGUCCUCAAGGCUAACAGGUUCAUUGGGCAGAUAUUGGAUCCUUCUUAUAGUGGUGAUACUAACAACUGUCAAUUUACAAAGUUGAGGAUUGCAGAUAUAGCAUCAAACAACUUCAGUGGCAUGUUGCCAGCAGAGUGGUUUAAGAUGCUGAAGUCCAUGAUGAACAGUUCUGAUAACGGAACUUCUGUCAUGGAAAAUCAGUAUUACCAUGGACAGACAUACCAGUUUACUGCUGCAGUCACAUACAAAGGCAAUGACAUGACAAUUUCCAAGAUCUUAACAUCACUUGUGCUCAUUGAUGUCUCAAAUAAUGAAUUCCACGGUAGCAUCCCUUCAAACAUUGGGGAACUUACAUUGCUUCACGGACUCAACAUGUCUCAUAACAUGCUUACAGGGCCAAUUCCAACUCAGUUUGGCAACUUGAACAACCUUGAGUCGUUGGACCUCUCCUCAAAUAAGCUUUCUGGUGAGAUCCCACAGGAGCUACCAUCAUUGAACUUCCUAGCAACGUUGAAUUUGUCCUAUAAUAUGUUGGCUGGAAGAAUACCACAAUCGUCACACUUCUUGACAUUUUCCAAUGCCUCUUUUGAGGGAAAUAUUGGGCUCUGCGGACCUCCAUUGUCUAAACAAUGUAGUUAUCCAACUGAACCAAACAUCAUGACACAUGCUUCCGAGAAGGAACCCAUAGAUGUUCUACUUUUUCUCUUCGCUGGGUUGGGAUUUGGUGUCUGCUUUGGAAUUACAAUUUUAGUCAUAUGGGGAAGCAACAACAGCAAGCAGCAAACUUGAGAGGGAACCAUGUUAUAGAAUGGCAGAAUAUUUUGUUAGUGACUCUUUGAGUCUUGAUCACUCCAGUAACACUCAGAAGGACAAAUAUUAAUGAGAUAAUCCAUAAAAUGCCAUUGACAAGCAUCUAGGUCCCAGAAAUGCCAUUGACAAGUGUGAGUUCCAAGAAAUGCCAUCGUACAAGCGAUUUUGUCCCAAAAAUGCCAUCGCCGUUAGGGUUCCAUCCAUUCCGCGCCGUUAAAUACACUGUUCAUCCUAUAGAACUUAACGGUGGACAGAACCCUAACGGCGAUGGCAUUUUUGGGACAAAAUCAUUUGUACGAUGGCAUUUCUUGGAACUCACACUUGUCGAUGGCAUUUCUGAGACUUGGACGCUUGUCAAUGACAUUUUAUGGAUUAUCUCAAUAUUAAUAGUGAUGCAUGUAUGAAUGAAAUAAAGGACUACGAUAUCAGGGAAUAUAGUAUGAGGGCUGUGGGCAUUGUAAUUUAGGCAACAAAGCAGACAACACCAUAUGCAUGAAAAGAUAUAUUUAUGUUUGAGAGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.4%
ME_num:
MEP:
11.99%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.94
Avg Expression:
9.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.73074078677994 | 0.000983838649537497 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.26278237584809 | 0.0477343759214922 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.59044967732536 | 0.000177194407045944 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.69717973168563 | 0.00692381200555787 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.48526005783045 | 0.0312468465880538 |