RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107276098

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

16845963

End:

16855418

Strand:

+

Ref_name:

LOC107276098

Sequence
(XR_003243661.1):

UAGUCGUGCGGCGGUGUUUCCCCUUCCUCUCGGCGGCGACGCCGACUCCCCGUGAGUUCGUCCGCCGCCUCCGCCGCCGCCGCCGCCGAUCCCCAUCCAUCCCGCGAGCGAGUAGGGGCGCCGUCGGUUGUCCUGCUGCUUCCGCCGUAUCCUGAUGAUCUCGGAGAAGAGGAUUGAUUUUGUCUGAUCAGGUGUUUAAUUCGGCACCAGAGUGGGAUCUAGGAACUGGUGGGAAAUGGAGAAGCCGUUAUAGCUUCGUCCAGGGUCAGUGAAGAUAGAUUUUGCCUCUUCCUUGUAUGCUGCCAAGGCAGAUAUCGCUGCCACCGCGGCAGCGCUCUCGCAUGCGCUUGGGCCGCCCUGCUAUCAGCUCCCACUGGCAAAAGUAAAUUCAUCACUGCCACUAUGGCCUCCAGUGACAUGCCCUUCAACAUUUGCCCAGAAGCGUCGUAUGUCAUUGCCUAGCCCACCUCCGGCCAAGAAGCUGCAAGUGCAGCAGUCUUCAUCCAUACUGCCACAAGAUUUUCCAAAGUUAGAGGUAUUGCCAGUUGAAAAGCCCACAAAGUUGCAGGAGCGGCGGUCACCGCAACAUGUAUCCCCAGAGCUGAAGCAAGGUUCACCGAAGAUGGAGAGGCCAUUGUUGCCAAGGCCUGCAACCUUUAUUGACGUGAUGCUGAGUUCUCAAAAGCCAUCUAGCGAUAUGUGGUCUGAAACAAAAGAUGUGACACUGACAAGGAAAACAAACUGCAGCUGCAAGUAUUCGAAAUGCCUGAAGCUGUAUUGUGAGUGCUUUGAAAAAGGCAGAUACUGCAUUGGUUGCAAUUGCACAAACUGUUGCAACAAUGUUAAUCAUGAGAAUGCAAGACAUGAUGCUAUCAAUGUUGCAUUGGAACGGAAUCCUGCAGCUUUUAUGCCAAAAGUUUCGAAUAGCACAGCCCACAACUGUGAGAGCAAAGCAGCAGAGGGUGAUAUUGUGGGUAAACAUACAAAGGGGUGUAAAUGCAAGAGAACAGAGUAUCUGAAGAAAUACUGUGAAUGCUUCAAAGCUAGUGUUUUCUGUUCAGAGAACUGCAGAUGUACGGGUUGCAAGAAUUUCAAGAGUAAUGAAGAUAGAAUUUCCCAGAAGAACACUGUUCAUGCACAUAAUGUGCAGAAUCCUGCUUCAAGUGGGAUGGUUGGACAAUCUGUGAUAAUUUUCCAUGCAGCAGAAAAUGACUCCAGUCUUUCAUUGGCUGCAUCUGUGAGCGAUCAUUCCAUUAACAACAACACUUCACAUGUAAUUCUUUUGCAGCAUACUUUUCAAAUUUGUCACGGGCCCUGCUUUCCUAAUAGGGCAAUUGCGUAUUUGACCCUCUUUUAAAAGCUAACUACCAAUUUGACUCUUUUUUUUCAACUUUGCUUAUUUGACCUUUUUUUUCAAAAUUAAAGAUAUGGUAUGACCCUAUUAUAUUAAGGGCUUCUAACGGUGUUAACUGAAGCACAAAAAGUCCCUUUUGCCCUUACUCAUUUGACCUUAUUACAUGUGGGACCCACCCGUCAGUUCUCUCUUCUCCUCUCCUCCUCUUUUCUCUUCUUCUUCUGACGCCGCCUCCUUCAUUCCUCCGCGUCGCUUCUUCCCUCGGCGCCGGCUGCCGUCGCCGCCGCCCCUGCCUCCCUUCUUCGCGCGCCAACCUCCGCCUCCCUCCCCGCUGCGCGCGCAGACGCCGACGCCACCGGCGCCGCCUCCGCAGACGCCGACGCCACCGAGCGCCGCCGCCGCCAGUCCCGGCUCCCCUCCCUCCCUUCGCCGGCGCCGGUCUUCGCCUCCCUCCCUUCGCCGGCGCCGGUCGCCUCCCUCCCCGUGCGCUGAUGCAGAUGCCGCCGCCGCCGCCACCGCCAGGCCUGGCUCCCCUCCCUCCCUUCGCCGGCGACGGCCUCCGCCUCCCACCCCGCGCACCGAUGCAGAUGCCGCCGCAGCCGCCUCUGUCGCCAGGCCCGGCUCCCCUCCCUCCCUUCGCCAGCGACGGCCUUCGCCUCCAUCCCCGCGCGCCGAUGCAGACGCCGCCGCCUCCGCCGCCAGGCCCAGCUCCCCUUCCUCCCCGCGCCGCGCGCCGGCCUCCGCCUCCCUCCCCGCUGCGCGCGUCAAGACAAGCUGGCGCAACACUUUUAGUUGAUACAAGUUGAAUAAUCAGAUGGCCACCAGCCCACCACUGCCAAGCACACGCCUUGCUCAGUCGGGCUUAGGGACACCCAUGAUUGUCAUGAACAGAACAAGCAUGUUGCAGAUCGUAGAAAUCCAGCUUAUAAGAAUCUAGAAAAGAUAAAAAAAGAACCAACUUUUGACUUAUAGCUUCUUUUUUGCAGUUUCCCUCAAAAACAAUUUUUUCCCUAAAAAAAGUUUCUUUUUUGCACCCUGUAUCUAUAUAUUCCCAUAAAAAGGAUAAAAAGUUGGACGAAUUUUUUAUUUUGGGAAAAAUUACAGUUAUCACAAGCUCUAAAUAGGCCCAAACUUAGAUUGAGGCUUUGUAGCGUUGCAUGCACCAUGCACGACAUGCGAACGAGCCCAACAUUUUGAGCCUGCUAUUUUUUUCAUUAUCUUGUGGGCUGGACUUUAUUGCACACUCACACUCCACAUACGCACCGUGAGCAGCUUGGUGAGGCUGAAAGCGCACCUCCUGUACACACGUAAAACGGAGUAACUCAUUAGCAUAUAAUUAAUUAAUUAUUUACUAAUUUUUUAAAAAUGAAUUAAUAUGAUUUUUAAAGCAACUUUACAAUAUAAUCUUUUUUUUAAAAAACACACUAUUUAACAGUUUGAAAAAUGUGCGCACGAAGAACAAUGGUAAUGAGUUGGGAACUCUCUGAAAGAAUUAACACAGCCGCAUGUCUAUUUGUCCCUUGUCUUCUAGUGGACAGCCCACAAUUAAUUAACCAAUCAUCCAUUGCCAAAUCCGAGUCCCAUUGGUUGUUUAUAUAUCAUCCCUUGUUUCGCUGGUUAGUAGAAAUCACUGCAUGUACCAAUAUAUACAUGGCUACACCUUGCGUACUGCAUACUCACAAGUAAACCUAUACUCAUCUAAGUGGCAGAACACAAAAAAUGUUUUUCCCUUGAUCAUACAUCCCCUUUUAAUAUCUUAAUUAGCGUGCAAAUGGACAAAUAAUGCGAGUGGAAGUAAGAGUUGAGCGUAGUAUUGGUGGUUUGAUGGUGAGACGCCCCGGGAUACAUUACUAUAUUAGGAAUUCAAUAUGGAGAGCCUUGUAACGGAUGUGUUCAAUCAGGACAUUUUAUAGCCGGAUACAACCAUGGUGUAUAAGUAAAUACGGUUUUCUUCUCUAGGCAUCAGCCUAAGCAUCCCAUUGCACAUGGCCUAAGGUGCCAUAAAUAGUUGGUGUGGAAUGAUGGACAGACCCAAUCAACACUACAAAGCUUAUCCACCCCAUUCAUCUUGUUACUUUUGUAUUUGCUAACCGAGGGUGUUAUAGGAGGAAGUUGUGGGUGAGAUUUGAUCUGUUAGGAAUAGAAUGUAUCGAGAACUAGAGUUGACACGACUUGAGAAAGAAGUGCUUGAGUGGUUAUGUUUCAAGAUGGGAAUGGUUAGGUUCUGGAUUGACCUAAACCAUUCCACAUGACCACUCUGGCCCAUGGUUUAGUAGGGGGCAACCCUUGAUGGUUUUAUUAAAUAAAUGGUUAUCCAAUGGAGCAAAGGGUUACCCUAUUAAACCUAUGAGACAUCAACCAAUUCAUACAACAGCCAGUUCAUAGAUUCAUGAAACAAAGGGUUAUCCAAGGUGCAUAAAAGAAUCAUUAUAUAUAUAUAUAUAUAUCUACUACUACUUAAAAAAUAAGAGGUGCUUCCAUCGUCCGUCAAAAAAACCGGGUGAAAAAAAACCGGGCAGAAAAAACCAAGUUUGUCCGAUAAAAAAACCGGACGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

238

LEP:

48.37%

ME_num:

253

MEP:

51.42%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.75

Avg Expression:

3.55

Tip: OSA-PHAS107276098 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.003317578382090.0323685976060171
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.142919944192360.0170552342853466
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.079429938206680.0304356296959376
4Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae1.307887903841610.00932576569485816
5Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.196253517732970.000442430926766954
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.09808698090220.00261876996871879