OSA-LNCN7893


Function Link


Basic Info

Chr:

Chr9

Start:

22615366

End:

22618095

Strand:

-

Ref_name:

OSA-LNCN7893

Sequence
(OSA-LNCN7893.1):

GUAUUUGCAAUAGGUUCUAUCCGAUAUGCCAAUAUUAUUUGUAUAUGGAUGCUAGAUUUCCUACUCAAUAUAUUUUAGCCUGCACGUUACCAUGGUUUCUCCCAUCUAUAGUUAUCAUCUACGGAAUUAUUUUCUCAAAUUUAUCGGUCUAAUUAUGGUACAUCUGCCUAUUCUGAUGCAAUCUAACCAUUUCUUGCAUGCCAUUGUUAUCGUUAUUGAUGCAAUGGUUUCUCAAGGCACGCCACUCUAGCUAGCUUGAAUUUUAGCGUUGUUUAAUAGAUAAUCUUUGCUUCUGGCUACACAACAUACUAAUUUCCCCUUAAGUAAUUUUUUUAUUAUGCAGAUUUUGCUAUCCUAAUCAUUUUCAGCACAUGUUAGGCAAGGAUACAGAGUGAUCAUCCUAUGACCAGCAGCUGGUCCAUGUCUUCAAAUCAAUUAUAGUUUUUUCAUAUGAACACAAAUAGUCAGUGCUGUUGCUUAUAUGAUUUAUGUGAAAUUGGGUUAUUUAGAUCUUCUUGAAUGGAUCAAGCUAACUCUACAUUAUGUGCAUGUGCUAUUUGGAAUUAAGAGAAAUCAUUGUAGAACAAAUCUUAUGUGAUAUGUCCUUAAUUGCUUUGUCAAUUAUUCAGGUAACUCGGUUCAUGCACUAUCUAAAUGUUUUCAAUCCAUAACUAUCUGACAGCACUUCAGGUGUAUUAUCUUGUAGUAACAACCUCGUUAUUCAACCUCACUAAGCAUUGAUUUUGUAUUGAGGGUAUAACUAGGACCGUUAUGAUUUAUAUGGUCGUUAACUGACAUCUUUUCCACAGAAAGUGGAACUCUGAGUAUACGAAUGUUCGAGGCCAGGUUUUGUAGGUUCAAGCUUUGGAGAACUUCAACAUGCUUACUAAUGAUGGUGUCUUUUUGGAACGAGCUAUCAACACAUAGAUUUUUGCUGAUUUAACCAUGAUACUGUAGUUUAGUUUAGCGCAAAAUAAGAUAUAACCGUGCUUUCAUUUGUAUGUAAGAAUGUAAAGAUGGAAAAUAUUUUUAUGUUAUGUGAACAAACCUUAGAUCAUAUGAAAUACUGGAAAUAGCAAGGUGUGCUGUAACAUGCUAAAUCUGUGUAGCUCAACAUACAUAUUGCAUCACCGGCUCUGUUUCGUCGGCUUUGAGAAAACUCCUGGAUACGACGACGCUCGUCGGCUGGACCUCUACUGCCUACUCUGACUCUGGCCACCACCUCGUCCUUGUCAAGACCAUCCCGGUGACAGGCCGCCUCCAUCUCGACUAACCUGGGGUACCAGACACCUCCAACACUGAAGUAUAGCUAUCCCAUCAACAUUAAAGUUCAAGUAGCAGGAGGUAUUUCAACCAACAUGAUUUUCCACGUCACCAGACGGUCGCUGCAACUUGAUGAAAGGAUGGGCAGACUUCGCAGCCAAACAAUGACAUAUAUCUCGAAUCAGUCUGCAUCUUCCACUUCUAUAAAACAACUUGCCUGCAAGCUAAUGUCGAUGUUCUCUAAACAACAUAACAAUACUCAUGGUUAUGUUAGAUGCAUCCUUUUGUUACCAGUAAACACGGUGAUCACAAUGGACAUGGACCGCUUUCCACCCCUAGCACUAUUACUAUGCUAAUUAGUUCUGCACCUUAC

Sequence
(OSA-LNCN7893.2):

GUAUUUGCAAUAGGUUCUAUCCGAUAUGCCAAUAUUAUUUGUAUAUGGAUGCUAGAUUUCCUACUCAAUAUAUUUUAGCCUGCACGUUACCAUGGUUUCUCCCAUCUAUAGUUAUCAUCUACGGAAUUAUUUUCUCAAAUUUAUCGGUCUAAUUAUGGUACAUCUGCCUAUUCUGAUGCAAUCUAACCAUUUCUUGCAUGCCAUUGUUAUCGUUAUUGAUGCAAUGGUUUCUCAAGGCACGCCACUCUAGCUAGCUUGAAUUUUAGCGUUGUUUAAUAGAUAAUCUUUGCUUCUGGCUACACAACAUACUAAUUUCCCCUUAAGUAAUUUUUUUAUUAUGCAGAUUUUGCUAUCCUAAUCAUUUUCAGCACAUGUUAGGCAAGGAUACAGAGUGAUCAUCCUAUGACCAGCAGCUGGUCCAUGUCUUCAAAUCAAUUAUAGUUUUUUCAUAUGAACACAAAUAGUCAGUGCUGUUGCUUAUAUGAUUUAUGUGAAAUUGGGUUAUUUAGAUCUUCUUGAAUGGAUCAAGCUAACUCUACAUUAUGUGCAUGUGCUAUUUGGAAUUAAGAGAAAUCAUUGUAGAACAAAUCUUAUGUGAUAUGUCCUUAAUUGCUUUGUCAAUUAUUCAGGUAACUCGGUUCAUGCACUAUCUAAAUGUUUUCAAUCCAUAACUAUCUGACAGCACUUCAGGUGUAUUAUCUUGUAGUAACAACCUCGUUAUUCAACCUCACUAAGCAUUGAUUUUGUAUUGAGGGUAUAACUAGGACCGUUAUGAUUUAUAUGGUCGUUAACUGACAUCUUUUCCACAGAAAGUGGAACUCUGAGUAUACGAAUGUUCGAGGCCAGGUUUUGUAGGUUCAAGCUUUGGAGAACUUCAACAUGCUUACUAAUCUCAACAUACAUAUUGCAUCACCGGCUCUGUUUCGUCGGCUUUGAGAAAACUCCUGGAUACGACGACGCUCGUCGGCUGGACCUCUACUGCCUACUCUGACUCUGGCCACCACCUCGUCCUUGUCAAGACCAUCCCGGUGACAGGCCGCCUCCAUCUCGACUAACCUGGGGUACCAGACACCUCCAACACUGAAGUAUAGCUAUCCCAUCAACAUUAAAGUUCAAGUAGCAGGAGGUAUUUCAACCAACAUGAUUUUCCACGUCACCAGACGGUCGCUGCAACUUGAUGAAAGGAUGGGCAGACUUCGCAGCCAAACAAUGACAUAUAUCUCGAAUCAGUCUGCAUCUUCCACUUCUAUAAAACAACUUGCCUGCAAGCUAAUGUCGAUGUUCUCUAAACAACAUAACAAUACUCAUGGUUAUGUUAGAUGCAUCCUUUUGUUACCAGUAAACACGGUGAUCACAAUGGACAUGGACCGCUUUCCACCCCUAGCACUAUUACUAUGCUAAUUAGUUCUGCACCUUAC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

448

LEP:

91.06%

ME_num:

6

MEP:

1.22%

HE_num:

37

HEP:

7.52%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.98

Avg Expression:

19.63


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-5.58319320565370.000614491225907465
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-5.686502194131670.000323787834749081
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-5.835884163701470.000196714874280798
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-3.866469727664950.0252316258559662
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-5.076775190866630.00239143988971886
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-5.243811014917470.00168449991847704
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.79620345836170.00990968885793564
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-3.18019325964860.0216580850996042
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-5.649579212530550.000259216954868211
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-3.720664460859950.00425517691929185
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.579407860452590.00430989187562762
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.311269592712880.000328082215117072