Chr:
Chr9
Start:
22615366
End:
22618095
Strand:
-
Ref_name:
OSA-LNCN7893
Sequence
(OSA-LNCN7893.1):
GUAUUUGCAAUAGGUUCUAUCCGAUAUGCCAAUAUUAUUUGUAUAUGGAUGCUAGAUUUCCUACUCAAUAUAUUUUAGCCUGCACGUUACCAUGGUUUCUCCCAUCUAUAGUUAUCAUCUACGGAAUUAUUUUCUCAAAUUUAUCGGUCUAAUUAUGGUACAUCUGCCUAUUCUGAUGCAAUCUAACCAUUUCUUGCAUGCCAUUGUUAUCGUUAUUGAUGCAAUGGUUUCUCAAGGCACGCCACUCUAGCUAGCUUGAAUUUUAGCGUUGUUUAAUAGAUAAUCUUUGCUUCUGGCUACACAACAUACUAAUUUCCCCUUAAGUAAUUUUUUUAUUAUGCAGAUUUUGCUAUCCUAAUCAUUUUCAGCACAUGUUAGGCAAGGAUACAGAGUGAUCAUCCUAUGACCAGCAGCUGGUCCAUGUCUUCAAAUCAAUUAUAGUUUUUUCAUAUGAACACAAAUAGUCAGUGCUGUUGCUUAUAUGAUUUAUGUGAAAUUGGGUUAUUUAGAUCUUCUUGAAUGGAUCAAGCUAACUCUACAUUAUGUGCAUGUGCUAUUUGGAAUUAAGAGAAAUCAUUGUAGAACAAAUCUUAUGUGAUAUGUCCUUAAUUGCUUUGUCAAUUAUUCAGGUAACUCGGUUCAUGCACUAUCUAAAUGUUUUCAAUCCAUAACUAUCUGACAGCACUUCAGGUGUAUUAUCUUGUAGUAACAACCUCGUUAUUCAACCUCACUAAGCAUUGAUUUUGUAUUGAGGGUAUAACUAGGACCGUUAUGAUUUAUAUGGUCGUUAACUGACAUCUUUUCCACAGAAAGUGGAACUCUGAGUAUACGAAUGUUCGAGGCCAGGUUUUGUAGGUUCAAGCUUUGGAGAACUUCAACAUGCUUACUAAUGAUGGUGUCUUUUUGGAACGAGCUAUCAACACAUAGAUUUUUGCUGAUUUAACCAUGAUACUGUAGUUUAGUUUAGCGCAAAAUAAGAUAUAACCGUGCUUUCAUUUGUAUGUAAGAAUGUAAAGAUGGAAAAUAUUUUUAUGUUAUGUGAACAAACCUUAGAUCAUAUGAAAUACUGGAAAUAGCAAGGUGUGCUGUAACAUGCUAAAUCUGUGUAGCUCAACAUACAUAUUGCAUCACCGGCUCUGUUUCGUCGGCUUUGAGAAAACUCCUGGAUACGACGACGCUCGUCGGCUGGACCUCUACUGCCUACUCUGACUCUGGCCACCACCUCGUCCUUGUCAAGACCAUCCCGGUGACAGGCCGCCUCCAUCUCGACUAACCUGGGGUACCAGACACCUCCAACACUGAAGUAUAGCUAUCCCAUCAACAUUAAAGUUCAAGUAGCAGGAGGUAUUUCAACCAACAUGAUUUUCCACGUCACCAGACGGUCGCUGCAACUUGAUGAAAGGAUGGGCAGACUUCGCAGCCAAACAAUGACAUAUAUCUCGAAUCAGUCUGCAUCUUCCACUUCUAUAAAACAACUUGCCUGCAAGCUAAUGUCGAUGUUCUCUAAACAACAUAACAAUACUCAUGGUUAUGUUAGAUGCAUCCUUUUGUUACCAGUAAACACGGUGAUCACAAUGGACAUGGACCGCUUUCCACCCCUAGCACUAUUACUAUGCUAAUUAGUUCUGCACCUUAC
Sequence
(OSA-LNCN7893.2):
GUAUUUGCAAUAGGUUCUAUCCGAUAUGCCAAUAUUAUUUGUAUAUGGAUGCUAGAUUUCCUACUCAAUAUAUUUUAGCCUGCACGUUACCAUGGUUUCUCCCAUCUAUAGUUAUCAUCUACGGAAUUAUUUUCUCAAAUUUAUCGGUCUAAUUAUGGUACAUCUGCCUAUUCUGAUGCAAUCUAACCAUUUCUUGCAUGCCAUUGUUAUCGUUAUUGAUGCAAUGGUUUCUCAAGGCACGCCACUCUAGCUAGCUUGAAUUUUAGCGUUGUUUAAUAGAUAAUCUUUGCUUCUGGCUACACAACAUACUAAUUUCCCCUUAAGUAAUUUUUUUAUUAUGCAGAUUUUGCUAUCCUAAUCAUUUUCAGCACAUGUUAGGCAAGGAUACAGAGUGAUCAUCCUAUGACCAGCAGCUGGUCCAUGUCUUCAAAUCAAUUAUAGUUUUUUCAUAUGAACACAAAUAGUCAGUGCUGUUGCUUAUAUGAUUUAUGUGAAAUUGGGUUAUUUAGAUCUUCUUGAAUGGAUCAAGCUAACUCUACAUUAUGUGCAUGUGCUAUUUGGAAUUAAGAGAAAUCAUUGUAGAACAAAUCUUAUGUGAUAUGUCCUUAAUUGCUUUGUCAAUUAUUCAGGUAACUCGGUUCAUGCACUAUCUAAAUGUUUUCAAUCCAUAACUAUCUGACAGCACUUCAGGUGUAUUAUCUUGUAGUAACAACCUCGUUAUUCAACCUCACUAAGCAUUGAUUUUGUAUUGAGGGUAUAACUAGGACCGUUAUGAUUUAUAUGGUCGUUAACUGACAUCUUUUCCACAGAAAGUGGAACUCUGAGUAUACGAAUGUUCGAGGCCAGGUUUUGUAGGUUCAAGCUUUGGAGAACUUCAACAUGCUUACUAAUCUCAACAUACAUAUUGCAUCACCGGCUCUGUUUCGUCGGCUUUGAGAAAACUCCUGGAUACGACGACGCUCGUCGGCUGGACCUCUACUGCCUACUCUGACUCUGGCCACCACCUCGUCCUUGUCAAGACCAUCCCGGUGACAGGCCGCCUCCAUCUCGACUAACCUGGGGUACCAGACACCUCCAACACUGAAGUAUAGCUAUCCCAUCAACAUUAAAGUUCAAGUAGCAGGAGGUAUUUCAACCAACAUGAUUUUCCACGUCACCAGACGGUCGCUGCAACUUGAUGAAAGGAUGGGCAGACUUCGCAGCCAAACAAUGACAUAUAUCUCGAAUCAGUCUGCAUCUUCCACUUCUAUAAAACAACUUGCCUGCAAGCUAAUGUCGAUGUUCUCUAAACAACAUAACAAUACUCAUGGUUAUGUUAGAUGCAUCCUUUUGUUACCAGUAAACACGGUGAUCACAAUGGACAUGGACCGCUUUCCACCCCUAGCACUAUUACUAUGCUAAUUAGUUCUGCACCUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.06%
ME_num:
MEP:
1.22%
HE_num:
HEP:
7.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.98
Avg Expression:
19.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.5831932056537 | 0.000614491225907465 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.68650219413167 | 0.000323787834749081 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.83588416370147 | 0.000196714874280798 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.86646972766495 | 0.0252316258559662 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.07677519086663 | 0.00239143988971886 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.24381101491747 | 0.00168449991847704 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.7962034583617 | 0.00990968885793564 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.1801932596486 | 0.0216580850996042 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.64957921253055 | 0.000259216954868211 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.72066446085995 | 0.00425517691929185 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.57940786045259 | 0.00430989187562762 |
12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.31126959271288 | 0.000328082215117072 |