Chr:
Chr9
Start:
21905192
End:
21912057
Strand:
-
Ref_name:
OSA-LNCN7879
Sequence
(OSA-LNCN7879.1):
UAUGUGAACGUUUUGCAACCUGCAUUGUUCUAGUUGGUGACACUGGUUGACCUGUAUUGCCCAAUUUGUUUUGAGCGAUUUUGAAAUUUCAAGAGCACGAGCAGUUUCUGAUUUGCUCCCUAUUUGGAUUUUCACGGUCCGAUUUUCAGUAUUGGCUACCUGAUUCGAACCAUCGGCCAUCGCGAGCACUGAAUUUGUGAUUUCCCGCUGCGAUUUGGGGGGCGGAACCGCGGAAAUGCCCAUAUUCAUGUAGGAAUCUCCUGAGGUGAUGAGGUAUCUUGCAAUGUGGUUGACGCGGGGUCCAAAUUCAGUGCGCGCGAUCGGAAAUUUGGAACCAUCCCGAGCGCUAAAUUUAUGAUUUCCCGCUUGGGUUUUGGAGUUUGAAUUUUGGAACACCUAAACUCAGUUUCAGAUUAUUUGAAGGUGGUUUAAAAUUUAAUUUCGAAAGAGGACCCAUUAUUUUCAAAAUUAUUCAAAGGGGAAGAGGAAGAGACCGCGGGUCAGCGAGUCGGUUUCCAAAUUCCAACCCACCGACUCGUCGCCACAGAGCGCAGAUGAAGGGGAAGGAGACAAGUCGAAAGCACGGAUCUCUCGCCAUGGGAGCGGAGGGAAGGGAGAGCAGCCGCGUCGGCGACGAUCCCGCUCAUCGUCCGGCCGGCGCCGGUGGCGCAGCCCGCUCGCACAGGUAUUCGCCUCUGGGAUGAGACUACGGGAGAGAAGCGUGUGAUCGUGCUGCGGCGCCUGGAGGAGGAGGAGGCAUUGGGCGUGGCCGCGACGAGCUGCAAUCCUUGGGCUGCUCGAGUCCGAGUCCUCACCCUUGGGCCGGAAUUCGUGCGGCUGGUCCCUCCGGUUGGACUUUUCUACAUUGGAAUCAUGGGGAGAUUUCAAGUUCAACAAUGUGGAUGAAAAAUUAUUUCAGCGCACUAGUGAACCGAAGUAAGUUGAUAUUCCCAUGGAAACGGUGAUGGUUCAAAGGCUCUGCUAAGUACGUACGAUUGACCUGCUGGGCGGUCUGAAGAAUUCAGAAGCAACACGCUUGCAGUAAGAUUCACAAUGAAGACAUCAAUAAGUGUCUUAUAUAUGCAUAUACUAAGACAAUCAUAUCCAGGACAGACGCUAGAGUUGGAGUGGAUCAAUGCAGAUUAAGCUGGCAUCUGGUACAACAGGAAGAAGAAGAAGAAAAAGGCUCCACUUAAGAAGCAAGAUAUUGCACUUGAAGCUCAAGAAGAAAACGCACAAAUUUAGAAAUAAAAGAAAGAGAGACAUCAAAAUGCUGGCUGUUCCUAUAUAUAUGAUCAUAACUAUAAUCCUCCUUAUGAACUAAACUCCAGGAAGGACUCCAACAACCUUCAGGCAUCAGUCCUCCAACUCCAGCAAUACGCUGUGUGUUGAAAACCAAAAGGAUAGCUUAUUUUUUUGCU
Sequence
(OSA-LNCN7879.2):
UAUGUGAACGUUUUGCAACCUGCAUUGUUCUAGUUGGUGACACUGGUUGACCUGUAUUGCCCAAUUUGUUUUGAGCGAUUUUGAAAUUUCAAGAGCACGAGCAGUUUCUGAUUUGCUCCCUAUUUGGAUUUUCACGGUCCGAUUUUCAGUAUUGGCUACCUGAUUCGAACCAUCGGCCAUCGCGAGCACUGAAUUUGUGAUUUCCCGCUGCGAUUUGGGGGGCGGAACCGCGGAAAUGCCCAUAUUCAUGUAGGAAUCUCCUGAGGUGAUGAGGUAUCUUGCAAUGUGGUUGACGCGGGGUCCAAAUUCAGUGCGCGCGAUCGGAAAUUUGGAACCAUCCCGAGCGCUAAAUUUAUGAUUUCCCGCUUGGGUUUUGGAGUUUGAAUUUUGGAACACCUAAACUCAGUUUCAGAUUAUUUGAAGGUGGUUUAAAAUUUAAUUUCGAAAGAGGACCCAUUAUUUUCAAAAUUAUUCAAAGGGGAAGAGGAAGAGACCGCGGGUCAGCGAGUCGGUUUCCAAAUUCCAACCCACCGACUCGUCGCCACAGAGCGCAGAUGAAGGGGAAGGAGACAAGUCGAAAGCACGGAUCUCUCGCCAUGGGAGCGGAGGGAAGGGAGAGCAGCCGCGUCGGCGACGAUCCCGCUCAUCGUCCGGCCGGCGCCGGUGGCGCAGCCCGCUCGCACAGGUAUUCGCCUCUGGGAUGAGACUACGGGAGAGAAGCGUGUGAUCGUGCUGCGGCGCCUGGAGGAGGAGGAGGCAUUGGGCGUGGCCGCGACGAGCUGCAAUCCUUGGGCUGCUCGAGUCCGAGUCCUCACCCUUGGGCCGGAAUUCGUGCGGCUGGUCCCUCCGGUUGGACUUUUCUACAUUGGAAUCAUGGGGAGAUUUCAAGUUCAACAAUGUGGAUGAAAAAUUAUUUCAGCGCACUAGUGAACCGAAUUGAUAUUCCCAUGGAAACGGUGAUGGUUCAAAGGCUCUGCUAAGUACGUACGAUUGACCUGCUGGGCGGUCUGAAGAAUUCAGAAGCAACACGCUUGCAGUAAGAUUCACAAUGAAGACAUCAAUAAGGACAGACGCUAGAGUUGGAGUGGAUCAAUGCAGAUUAAGCUGGCAUCUGGUACAACAGGAAGGACUCCAACAACCUUCAGGCAUCAGUCCUCCAACUCCAGCAAUACGCUGUGUGUUGAAAACCAAAAGGAUAGCUUAUUUUUUUG
Sequence
(OSA-LNCN7879.3):
UAUGUGAACGUUUUGCAACCUGCAUUGUUCUAGUUGGUGACACUGGUUGACCUGUAUUGCCCAAUUUGUUUUGAGCGAUUUUGAAAUUUCAAGAGCACGAGCAGUUUCUGAUUUGCUCCCUAUUUGGAUUUUCACGGUCCGAUUUUCAGUAUUGGCUACCUGAUUCGAACCAUCGGCCAUCGCGAGCACUGAAUUUGUGAUUUCCCGCUGCGAUUUGGGGGGCGGAACCGCGGAAAUGCCCAUAUUCAUGUAGGAAUCUCCUGAGGUGAUGAGGUAUCUUGCAAUGUGGUUGACGCGGGGUCCAAAUUCAGUGCGCGCGAUCGGAAAUUUGGAACCAUCCCGAGCGCUAAAUUUAUGAUUUCCCGCUUGGGUUUUGGAGUUUGAAUUUUGGAACACCUAAACUCAGUUUCAGAUUAUUUGAAGGUGGUUUAAAAUUUAAUUUCGAAAGAGGACCCAUUAUUUUCAAAAUUAUUCAAAGGGGAAGAGGAAGAGACCGCGGGUCAGCGAGUCGGUUUCCAAAUUCCAACCCACCGACUCGUCGCCACAGAGCGCAGAUGAAGGGGAAGGAGACAAGUCGAAAGCACGGAUCUCUCGCCAUGGGAGCGGAGGGAAGGGAGAGCAGCCGCGUCGGCGACGAUCCCGCUCAUCGUCCGGCCGGCGCCGGUGGCGCAGCCCGCUCGCACAGGUAUUCGCCUCUGGGAUGAGACUACGGGAGAGAAGCGUGUGAUCGUGCUGCGGCGCCUGGAGGAGGAGGAGGCAUUGGGCGUGGCCGCGACGAGCUGCAAUCCUUGGGCUGCUCGAGUCCGAGUCCUCACCCUUGGGCCGGAAUUCGUGCGGCUGGUCCCUCCGGUUGGACUUUUCUACAUUGGAAUCAUGGGGAGAUUUCAAGUUCAACAAUGUGGAUGAAAAAUUAUUUCAGCGCACUAGUGAACCGAAUUGAUAUUCCCAUGGAAACGGUGAUGGUUCAAAGGCUCUGCUAAGUACGUACGAUUGACCUGCUGGGCGGUCUGAAGAAUUCAGAAGCAACACGCUUGCAGUAAGAUUCACAAUGAAGACAUCAAUAAGACGCUAGAGUUGGAGUGGAUCAAUGCAGAUUAAGCUGGCAUCUGGUACAACAGGUAUACUUUUGUUCAGUUUUCAUUGAUGUAUAUAGGCAC
Sequence
(OSA-LNCN7879.4):
UAUGUGAACGUUUUGCAACCUGCAUUGUUCUAGUUGGUGACACUGGUUGACCUGUAUUGCCCAAUUUGUUUUGAGCGAUUUUGAAAUUUCAAGAGCACGAGCAGUUUCUGAUUUGCUCCCUAUUUGGAUUUUCACGGUCCGAUUUUCAGUAUUGGCUACCUGAUUCGAACCAUCGGCCAUCGCGAGCACUGAAUUUGUGAUUUCCCGCUGCGAUUUGGGGGGCGGAACCGCGGAAAUGCCCAUAUUCAUGUAGGAAUCUCCUGAGGUGAUGAGGUAUCUUGCAAUGUGGUUGACGCGGGGUCCAAAUUCAGUGCGCGCGAUCGGAAAUUUGGAACCAUCCCGAGCGCUAAAUUUAUGAUUUCCCGCUUGGGUUUUGGAGUUUGAAUUUUGGAACACCUAAACUCAGUUUCAGAUUAUUUGAAGGUGGUUUAAAAUUUAAUUUCGAAAGAGGACCCAUUAUUUUCAAAAUUAUUCAAAGGGGAAGAGGAAGAGACCGCGGGUCAGCGAGUCGGUUUCCAAAUUCCAACCCACCGACUCGUCGCCACAGAGCGCAGAUGAAGGGGAAGGAGACAAGUCGAAAGCACGGAUCUCUCGCCAUGGGAGCGGAGGGAAGGGAGAGCAGCCGCGUCGGCGACGAUCCCGCUCAUCGUCCGGCCGGCGCCGGUGGCGCAGCCCGCUCGCACAGGUAUUCGCCUCUGGGAUGAGACUACGGGAGAGAAGCGUGUGAUCGUGCUGCGGCGCCUGGAGGAGGAGGAGGCAUUGGGCGUGGCCGCGACGAGCUGCAAUCCUUGGGCUGCUCGAGUCCGAGUCCUCACCCUUGGGCCGGAAUUCGUGCGGCUGGUCCCUCCGGUUGGACUUUUCUACAUUGGAAUCAUGGGGAGAUUUCAAGUUCAACAAUGUGGAUGAAAAAUUAUUUCAGCGCACUAGUGAACCGAAUUGAUAUUCCCAUGGAAACGGUGAUGGUUCAAAGGCUCUGCUAAGUACGUACGAUUGACCUGCUGGGCGGUCUGAAGAAUUCAGAAGCAACACGCUUGCAGUAAGAUUCACAAUGAAGACAUCAAUAAGGGCUACUGCUAAGUGCCAACUGCAAGUGGUGGCUU
Sequence
(OSA-LNCN7879.5):
UAUGUGAACGUUUUGCAACCUGCAUUGUUCUAGUUGGUGACACUGGUUGACCUGUAUUGCCCAAUUUGUUUUGAGCGAUUUUGAAAUUUCAAGAGCACGAGCAGUUUCUGAUUUGCUCCCUAUUUGGAUUUUCACGGUCCGAUUUUCAGUAUUGGCUACCUGAUUCGAACCAUCGGCCAUCGCGAGCACUGAAUUUGUGAUUUCCCGCUGCGAUUUGGGGGGCGGAACCGCGGAAAUGCCCAUAUUCAUGUAGGAAUCUCCUGAGGUGAUGAGGUAUCUUGCAAUGUGGUUGACGCGGGGUCCAAAUUCAGUGCGCGCGAUCGGAAAUUUGGAACCAUCCCGAGCGCUAAAUUUAUGAUUUCCCGCUUGGGUUUUGGAGUUUGAAUUUUGGAACACCUAAACUCAGUUUCAGAUUAUUUGAAGGUGGUUUAAAAUUUAAUUUCGAAAGAGGACCCAUUAUUUUCAAAAUUAUUCAAAGGGGAAGAGGAAGAGACCGCGGGUCAGCGAGUCGGUUUCCAAAUUCCAACCCACCGACUCGUCGCCACAGAGCGCAGAUGAAGGGGAAGGAGACAAGUCGAAAGCACGGAUCUCUCGCCAUGGGAGCGGAGGGAAGGGAGAGCAGCCGCGUCGGCGACGAUCCCGCUCAUCGUCCGGCCGGCGCCGGUGGCGCAGCCCGCUCGCACAGGUAUUCGCCUCUGGGAUGAGACUACGGGAGAGAAGCGUGUGAUCGUGCUGCGGCGCCUGGAGGAGGAGGAGGCAUUGGGCGUGGCCGCGACGAGCUGCAAUCCUUGGGCUGCUCGAGUCCGAGUCCUCACCCUUGGGCCGGAAUUCGUGCGGCUGGUCCCUCCGGUUGGACUUUUCUACAUUGGAAUCAUGGGGAGAUUUCAAGUUCAACAAUGUGGAUGAAAAAUUAUUUCAGCGCACUAGUGAACCGAAUUGGAGGUUGACGGGGAGAAUAAAGUGUAAAGCCACCGACACUACACAGGGCCACACUGAAGGAUGUCUAAGCUUUAAGGAUUUCACAUCAUCGCGACAUGAACCAAGAAUUGGAUGUUAAAUUUGUCUUAUCAAGAGCACCUAGAAAAGUGAACCAUGUGUGACCCAUUAGAGAACUGAGAAAACCUUCUAAUGUACUUUGUAAAGUAGCUAUGGUCCAUGGAAGCAAGGAAUACUUUAUGGCUAUCACUGAUGGAUAUGGGGGAAAAGAAGAGAGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.95%
ME_num:
MEP:
75.0%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.71
Avg Expression:
3.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.03288834477733 | 2.00474243100351e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.02800698977441 | 1.68082513347414e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.47632988491475 | 6.75334260569616e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.80183921979597 | 3.28517501092988e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.6174719197427 | 4.78043116661684e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.63626484776048 | 3.21090555133886e-11 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.73547516607998 | 0.0367597865286487 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.80791473169676 | 1.77023296537296e-08 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.74126615891134 | 0.000103671225244363 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.66252582194136 | 0.0259844991640825 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.21909814009084 | 0.0409279402755754 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.93949012093112 | 6.2273302890268e-16 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.76445468238842 | 5.78552423658615e-10 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.79756184987542 | 0.00193035879202865 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.17441744562816 | 0.000777419550805403 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.91743725491929 | 7.0144732163363e-08 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.6098115426558 | 4.08075327887876e-10 |