OSA-LNCN7872


Function Link


Basic Info

Chr:

Chr9

Start:

21594718

End:

21597983

Strand:

-

Ref_name:

OSA-LNCN7872

Sequence
(OSA-LNCN7872.1):

CAAACACCAAGUAUCCUUCAUUUAAGUAUUGUACCCAUAUCGAAGAUUCGAAGUAUCCGCCGCAAAUGUCAAAAAAAAAAAAAAAGUAUCCGCCGGCGGCGGCGGAAGUGGCGGCCGCUAGCGCCGGUGAAUCUCGCGCGGCCGCCUGGGCGCUCGCUAGGCAGGCUCGCCGGUGGAGUCUGCUGUGACAUCGAUGCCCACAGUCUGGUGACUGGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGACUUCAGUAGCUACAAACAGCAAAUGUGCUGGCUGGCCCCAACAGUUGGG

Sequence
(OSA-LNCN7872.2):

GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGGUCAGUUCCUCAGGUACUACACAAUGAGAUAUUGGCAGACAAGUCUUGUGCUGAUAGUGAAAGAUAAGCUGCAUAUGUUAAUCAAAAGACCAAUCAUUUUCACAAUGAUCAGGGACCCUGUUCUUGUACUUCGCAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGGUAUGGCCAGUUCACAAUGUGCUUAUGUAUGUUCUUGACAGUUUGAUUAAGUCUGAAAGGCAGUUUGUUAAUAAAUGCAGAGUAUGAAACUUACUGAACAGUCCCCAUCUCCCAUCUCCAUUCUGAUUGAUGACCUACCGACUUGUACAUUGCAUGUGGUGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGACUUCAGUAGCUACAAACAGCAAAUGUGC

Sequence
(OSA-LNCN7872.3):

GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGGUCAGUUCCUCAGGUACUACACAAUGAGAUAUUGGCAGACAAGUCUUGUGCUGAUAGUGAAAGAUAAGCUGCAUAUGUUAAUCAAAAGACCAAUCAUUUUCACAAUGAUCAGGGACCCUGUUCUUGUACUUCGCAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGGUAUGGCCAGUUCACAAUGUGCUUAUGUAUGUUCUUGACAGUUUGAUUAAGUCUGAAAGGCAGUUUGUUAAUAAAUGCAGAGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGACUUCAGUAGC

Sequence
(OSA-LNCN7872.4):

CAAACACCAAGUAUCCUUCAUUUAAGUAUUGUACCCAUAUCGAAGAUUCGAAGUAUCCGCCGCAAAUGUCAAAAAAAAAAAAAAAGUAUCCGCCGGCGGCGGCGGAAGUGGCGGCCGCUAGCGCCGGUGAAUCUCGCGCGGCCGCCUGGGCGCUCGCUAGGCAGGCUCGCCGGUGGAGUCUGCUGUGACAUCGAUGCCCACAGUCUGGUGACUGUUUUACCAUUUCAGGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCAAAAAUGGCUGCAACUGCUGGUUGGCCACGUUUCUUCUUGAUUAUUUGCAAGAUCAAAUGGCUUUACAUAGCAUAUUUCACUUUCCUUUUGUUAAUCUAACUAUCUUACAUUGGACCAUUCCAGGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGAC

Sequence
(OSA-LNCN7872.5):

GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGGUCAGUUCCUCAGGGACCCUGUUCUUGUACUUCGCAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGGUAUGGCCAGUUCACAAUGUGCUUAUGUAUGUUCUUGACAGUUUGAUUAAGUCUGAAAGGCAGUUUGUUAAUAAAUGCAGAGUAUGAAACUUACUGAACAGUCCCCAUCUCCCAUCUCCAUUCUGAUUGAUGACCUACCGACUUGUACAUUGCAUGUGGUGUGAGCUUCUCUGAACUUUCCUGUGGGCCUACAACCAGCUGCCAACCUGAAGACCAUUUAGUGAAUCGUCUUUUUUUUUCUUUUUUAAAGAAAGAGAAGGAAACCCUCUCCCAUUUCUAUUACUAUAAAUGGAAACGCUACAGUUCAGUUUUCCAUUUGGAGAACCACUAUGGACAUGUCUUUUAUUAUGCUUUCAAAUUUUCUUUUGAGCAUUUCAGGCCUAAUUUUCUUAUAUGCAGUUUUACCAUUUCAGGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAU

Sequence
(OSA-LNCN7872.6):

GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGAGUAUGAAACUUACUGAACAGUCCCCAUCUCCCAUCUCCAUUCUGAUUGAUGACCUACCGACUUGUACAUUGCAUGUGGUGUGAGCUUCUCUGAACUUUCCUGUGGGCCUACAACCAGCUGCCAACCUGAAGACCAUUUAGUGAAUCGUCUUUUUUUUUCUUUUUUAAAGAAAGAGAAGGAAACCCUCUCCCAUUUCUAUUACUAUAAAUGGAAACGCUACAGUUCAGUUUUCCAUUUGGAGAACCACUAUGGACAUGUCUUUUAUUAUGCUUUCAAAUUUUCUUUUGAGCAUUUCAGGCCUAAUUUUCUUAUAUGCAGUUUUACCAUUUCAGGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

14

LEP:

2.85%

ME_num:

275

MEP:

55.89%

HE_num:

202

HEP:

41.06%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.76

Avg Expression:

19.17

Tip: OSA-LNCN7872 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.402439905186082.03123039609607e-43
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.898391729363173.55452372881218e-18
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73411.058589341441480.0117773107260859
4Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.926229013451870.000289267142026125
5Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-1.132062861863290.0272620003585855