Chr:
Chr9
Start:
21594718
End:
21597983
Strand:
-
Ref_name:
OSA-LNCN7872
Sequence
(OSA-LNCN7872.1):
CAAACACCAAGUAUCCUUCAUUUAAGUAUUGUACCCAUAUCGAAGAUUCGAAGUAUCCGCCGCAAAUGUCAAAAAAAAAAAAAAAGUAUCCGCCGGCGGCGGCGGAAGUGGCGGCCGCUAGCGCCGGUGAAUCUCGCGCGGCCGCCUGGGCGCUCGCUAGGCAGGCUCGCCGGUGGAGUCUGCUGUGACAUCGAUGCCCACAGUCUGGUGACUGGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGACUUCAGUAGCUACAAACAGCAAAUGUGCUGGCUGGCCCCAACAGUUGGG
Sequence
(OSA-LNCN7872.2):
GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGGUCAGUUCCUCAGGUACUACACAAUGAGAUAUUGGCAGACAAGUCUUGUGCUGAUAGUGAAAGAUAAGCUGCAUAUGUUAAUCAAAAGACCAAUCAUUUUCACAAUGAUCAGGGACCCUGUUCUUGUACUUCGCAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGGUAUGGCCAGUUCACAAUGUGCUUAUGUAUGUUCUUGACAGUUUGAUUAAGUCUGAAAGGCAGUUUGUUAAUAAAUGCAGAGUAUGAAACUUACUGAACAGUCCCCAUCUCCCAUCUCCAUUCUGAUUGAUGACCUACCGACUUGUACAUUGCAUGUGGUGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGACUUCAGUAGCUACAAACAGCAAAUGUGC
Sequence
(OSA-LNCN7872.3):
GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGGUCAGUUCCUCAGGUACUACACAAUGAGAUAUUGGCAGACAAGUCUUGUGCUGAUAGUGAAAGAUAAGCUGCAUAUGUUAAUCAAAAGACCAAUCAUUUUCACAAUGAUCAGGGACCCUGUUCUUGUACUUCGCAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGGUAUGGCCAGUUCACAAUGUGCUUAUGUAUGUUCUUGACAGUUUGAUUAAGUCUGAAAGGCAGUUUGUUAAUAAAUGCAGAGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGACUUCAGUAGC
Sequence
(OSA-LNCN7872.4):
CAAACACCAAGUAUCCUUCAUUUAAGUAUUGUACCCAUAUCGAAGAUUCGAAGUAUCCGCCGCAAAUGUCAAAAAAAAAAAAAAAGUAUCCGCCGGCGGCGGCGGAAGUGGCGGCCGCUAGCGCCGGUGAAUCUCGCGCGGCCGCCUGGGCGCUCGCUAGGCAGGCUCGCCGGUGGAGUCUGCUGUGACAUCGAUGCCCACAGUCUGGUGACUGUUUUACCAUUUCAGGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAUUAUAGGCAAUUUAAAUGUAAGCAAAAAUGGCUGCAACUGCUGGUUGGCCACGUUUCUUCUUGAUUAUUUGCAAGAUCAAAUGGCUUUACAUAGCAUAUUUCACUUUCCUUUUGUUAAUCUAACUAUCUUACAUUGGACCAUUCCAGGUAAGCCACAUAAAGGAAUCAGAAUCAGGGCCUCAACAUGCAUGAC
Sequence
(OSA-LNCN7872.5):
GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGGUCAGUUCCUCAGGGACCCUGUUCUUGUACUUCGCAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGGUAUGGCCAGUUCACAAUGUGCUUAUGUAUGUUCUUGACAGUUUGAUUAAGUCUGAAAGGCAGUUUGUUAAUAAAUGCAGAGUAUGAAACUUACUGAACAGUCCCCAUCUCCCAUCUCCAUUCUGAUUGAUGACCUACCGACUUGUACAUUGCAUGUGGUGUGAGCUUCUCUGAACUUUCCUGUGGGCCUACAACCAGCUGCCAACCUGAAGACCAUUUAGUGAAUCGUCUUUUUUUUUCUUUUUUAAAGAAAGAGAAGGAAACCCUCUCCCAUUUCUAUUACUAUAAAUGGAAACGCUACAGUUCAGUUUUCCAUUUGGAGAACCACUAUGGACAUGUCUUUUAUUAUGCUUUCAAAUUUUCUUUUGAGCAUUUCAGGCCUAAUUUUCUUAUAUGCAGUUUUACCAUUUCAGGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAGGGCUUUUGUGAGAAUCUUAUAUGGUAGAUUUCAGAGAAACUUGCCAUGCAUUCUGCAUGCUGCAAUUUCGAAAAGAGUGGCAUUCACUAU
Sequence
(OSA-LNCN7872.6):
GCCAUGGAUUUAUAGUUGGAGAGAAGGAGGUAUCCAGCCAAGUUAGGCAUGGUUGGAAACGCUGGGUAAGGAGACAAGGUCAUGAGCACAUCAUGUGCGAUGUUCCAGUCUGAUCAAGGCAAGGUGAUCGAGAUUUGACAUUGCUUUAGGGCCAACUGUUUGAUGUGUGGUGAGCACAUAACAGUGCACCGCCAUAUAACGUGCUUAGCGGAUAAGUGGCACGAGGGCCCCAUGCAAAUUGGGUCCAGUGUGUGAAGUUUGCAGUGUAUCACCGUGAGUUGCAAUCAAUUUAAGGGCCAUUAUCAUGGAGUAUGAAACUUACUGAACAGUCCCCAUCUCCCAUCUCCAUUCUGAUUGAUGACCUACCGACUUGUACAUUGCAUGUGGUGUGAGCUUCUCUGAACUUUCCUGUGGGCCUACAACCAGCUGCCAACCUGAAGACCAUUUAGUGAAUCGUCUUUUUUUUUCUUUUUUAAAGAAAGAGAAGGAAACCCUCUCCCAUUUCUAUUACUAUAAAUGGAAACGCUACAGUUCAGUUUUCCAUUUGGAGAACCACUAUGGACAUGUCUUUUAUUAUGCUUUCAAAUUUUCUUUUGAGCAUUUCAGGCCUAAUUUUCUUAUAUGCAGUUUUACCAUUUCAGGGUGUAGAAUUAUAUGUCAACAGUUAAACCUCACUCGUUCAUACUCGAAAAUCCGGUCUUAUAGUGUCAAUGAAAUCUGUUUUCCUUGACCCUUGUCAUCCUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
55.89%
HE_num:
HEP:
41.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.76
Avg Expression:
19.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.40243990518608 | 2.03123039609607e-43 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.89839172936317 | 3.55452372881218e-18 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.05858934144148 | 0.0117773107260859 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.92622901345187 | 0.000289267142026125 |
5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.13206286186329 | 0.0272620003585855 |