Chr:
Chr9
Start:
21584504
End:
21585130
Strand:
-
Ref_name:
OSA-LNCN7871
Sequence
(OSA-LNCN7871.1):
AUGUUAAAUUUUGAGAUCGUAAUUUUGCGGCAUUACUUGUUCCAGUUCCUAUCCGAACAUGUUACAGUUUACAUCACCUAGGAAUGCAAGACGACCAAGGAUUCAGAGCUUCAAUUAUUUUUAUCUGCAUUUUUAGGCCAAGGAGGAUUUCAGGAUAAUGUACAUCCAUACAUGGUUCUGAACAUUCUGAACAUGACUUGUUGGCAAGCUGUGUUUCAAAUUUUGACUGCUAGCACAGUAGCACUGGAUAGCUUUCCUUGACUGUUUGCUUCCAUCAUUUUUCUAUCUUCACCUGUACAAUAGUAUCCAGAAAUUUCUGAACUACCUGCACGAAUCAAUAUACCAUAUCGUUGGUCUAGUCCAAAGCAUGUACAGCAUCUCUUAUGCAAUAAAAAAAAUACUCCUUGGCCACAUAACCUGAGCUUUGAUUAGAAAACAUACAGACUUCCAGAACUCAGGAGUAACAAACAACUUCAAAGAAGAAAAAUGAAAAAGAUUAACUCUACAUAAUUUGUCAGAAGCUAGAAGCUGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
9.15%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.95
Avg Expression:
1.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.77990332691894 | 0.00727794480005128 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.65979828684196 | 0.0166245465429394 |