Chr:
Chr9
Start:
21131824
End:
21133309
Strand:
-
Ref_name:
OSA-LNCN7866
Sequence
(OSA-LNCN7866.1):
GUCUAACACUACCUUUUUCCUCAGCCGACAACUUCAUUCAUAUUCGUUCAUUCAUUCCUGUACAUGGUGCUCGAUGAAACUCUGUUGUGAUUAAGUUUUUCGUUCUGCGUGGGACGAUAAAAUAAACUCAAUUCUUUUGGUUUUUGUAGUCUUUUGGAUAUAAUACAUGGUAGAGCUUCCUCCGGGUGGUUGGUAGCAGAACAAGAUAGUAUAAGUUUUCAAGUGGAUAAAGCUAAAGCAAGGGAAAGGUGAUCUUCAGAAGAGCUGAGUAAGGCUGCAGCAGAAGGUUCAUUUUCCCUUUUGUGAGGUGCCAUAACUUUCUGGUGUCUGUUGAAGGACAAAGAUUAUAAAUGACAUAUAUUGCAGGAAAAUGACAUAUUUUGAGUGUUUUUAUAUGUUGGAAACGUGCAUUGCACGUGCACGAUUACUAGUAUGUUUCUAAAACACCAC
Sequence
(OSA-LNCN7866.2):
ACGGCUUGGGCGUGGAGAGUCGCAGUCGCGUCAUCGUUGAGGUUCGGCAGGAGGAAAGCCGGUGAAGCCGCGGCAGGAGCGGCGCGGAGCGCGCCGUUGAUGGCGACGUCGAAAGUGUCGAGGAAGCCGGCAGGGGCACCGUGGGCGCCUGGGGCGUCGGCGCGGUUGAAGAACGAGCUGUGGGAGACGUCGAUGCCGGGAGCCAGAAGCAGCUCACUGUUGUUGCAGGCACCAGGUCUGACGAAGAGGGUGGUAAGCUCCGGCGGGAUGGCAUCGGCCUCAGACCCUCACCAUCUGCUGCUCCAGCCAUAUGAAAGCAGGGAUGUUCCUCUUCCUUUAUCAUGGCUUUGCCUCCUCUCCAUCCGCCAUGCCAUCUCAGGAGAUUGAUGCUUCUAAUUAAGGGAAAGGUGAUCUUCAGAAGAGCUGAGUAAGCAUUUCAAUUCCAGAAUCCAUUUGAUUACAGUCUUUUCUUCUCUGUGCUAAAUUCUGGAAGUUGCUAGCUUCUAUUCAUCAAGUUAUACAUACAAGUUUGUAGUCUGAAAUUCAUUCAGAACACCAGGUUUAGUCAAUUAUUUCUUUUUCCAUCUAUGUAUGCAUAAAGAUCAAAUUCUCUCUAGGUGGAGUGAGCAGCUCUUUGAAUCUUGCAGUGCUUCAUUUUACUUCAAUUGUAAAAGGAUAUGUGCCCAUAAGUAUGUCCUUUGCUUCAGAGGUCAUUAGCAUUAACUGAUAUGCUUACAUGUUUGCCACUUAAAUGUGUUAUGUAGGCUGCAGCAGAAGGUUCAUUUUCCCUUUUGUGAGGUGCCAUAACUUUCUGGUGUCUGUUGAAGGACAAAGAUUAUAAAUGACAUAUAUUGCAGGAAAAUGACAUAUUUUGAGUGUUUUUAUAUGUUGGAAACGUGCAUUGCACGUGCACGAUUACUAGUAUGUUUCUAAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.25%
ME_num:
MEP:
43.5%
HE_num:
HEP:
28.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.70
Avg Expression:
10.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.22693617861779 | 2.00598825920516e-22 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.41489961332918 | 2.04930106535685e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.32985363004309 | 6.2379490135192e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.13470010626211 | 0.00187315535065059 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.51327330584279 | 8.55281769637519e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.08044566293905 | 0.000814130808883364 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.47884307798965 | 0.0128453060507787 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.53121032338785 | 5.12795731271379e-11 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.0321786919206 | 0.0410606538358383 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.85762324031363 | 2.13675640784973e-09 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.82639339044143 | 9.75468855712579e-08 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.4596000511382 | 0.0256737055778868 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.86188458387631 | 0.00134060945404717 |
| 14 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.55018966971167 | 0.015024854413578 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.14621752096363 | 5.16991711810795e-09 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.61330233682555 | 1.60159212705559e-18 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.82121812604658 | 2.10783848857621e-13 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.23184456684839 | 8.16537647127048e-09 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.23832773167394 | 1.72378390321311e-09 |