Chr:
Chr9
Start:
21099453
End:
21102675
Strand:
-
Ref_name:
OSA-LNCN7865
Sequence
(OSA-LNCN7865.1):
CUAUCAAUGGCUUCCAAGGCUUUUUAUGGUUGUCAAUUCUGAAUUUCUGAUUAGUCACUUAAAGAAAGGUGCAGGAAACAGCCUGGAUUGCUAUGUUGUCACAUUCUCAUUAAAAACAAAAACAACAACUACUCGUUUAUCAGGAUUGUUAAUUCGAGCAUUACUACAAAUCUAGAAUGAAGUCUGUUAGAUGUUGGCUCUAAUGCACUACCAUCAAAUAUAUCAAAAAGAACUCGUAAUAAUCUGAGGUUGGUGAAAUUCUACUGAAGUCGGCAAUGUUAGGCAUGGGAAGCUUUAAGCUGGACAGCCACUAGCAAUGGCGGGUGACUGAUGACCAUACAAGGUGGGGAAGGAACAAAGGCGAAGGCGGCAAAAGAAGAGAGGAGAACAAUUUAAAGCUAGCUAGCAGAGCUCUCUCUCUUUUCUCUCUCACAGCUUAUCCUUGUCUCUCUCUCAACCCCCUCACUCCUUUCUCCAUCUCAGUUUGAUGCUCCUUUUGUCGAAAAUGCAUUUUCUAAGUAAUCUGGAAGAUGCCCAUAUUCUCCAGCCAUUAUGUCCGUCCAUGUUUCAGCUCUGGGCCACCGCCACAGCUACCCUCACUUGAUAGAGGGAAGAGCCCUAAACUUGACAUUUUUUUCUCCAUAUUAUGAUGUAUCUUGCGACUGUUCAACCACCACAGGACAAAUAACCUAUGAAAAUAAGCCUACUAAAGUGUAUGCUAGGCUUAACUUGCCUAAUUAAGGAGGUACCAAAUUUUUACGCUACAAAAAUCUCCUAUGUGAGUCCAUACCUUUGACCAAUUGAGCUUGAUAAGCUGCUGAAGCCAAGGCUGCCAUCGGUUGGUUUAAUGUUGAUAUAAACCGUACGAUUUAUGAGUAAUAUACAAAAGUAAACAUUUUAUAUGUAUCCUUAAAUAAUUUAAAACUUAAUAUUUAAAAAUAAACUCCGAUGAAAAAACAACAAAACCAACUCUAAAACUAAAUUUUAAAAUUUAAAUUUUAGCUGUGGUCUAUAACAAAACAUAGGAGCCCAAAAUUCAACAGUGUUAAUAGAUAUUUCUUCCGUCCCAGAAAAACUUAACCUGACACAUCCUAAUACGAUAAAUCUAGAUAUACUCUAUGUCCAGAUUCAUAGAGUAUAUCGUAGGUUGAGUUUUUUUUU
Sequence
(OSA-LNCN7865.2):
GAUUGUUAAUUCGAGCAUUACUACAAAUCUAGAAUGAAGUCUGUUAGAUGUUGGCUCUAAUGCACUACCAUCAAAUAUAUCAAAAAGAACUCGUAAUAAUCUGAGGUUGGUGAAAUUCUACUGAAGUCGGCAAUGGCAUGGGAAGCUUUAAGCUGGACAGCCACUAGCAAUGGCGGGUGACUGAUGACCAUACAAGGUGGGGAAGGAACAAAGGCGAAGGCGGCAAAAGAAGAGAGGAGAACAAUUUAAAGCUAGCUAGCAGAGCUCUCUCUCUUUUCUCUCUCACAGCUUAUCCUUGUCUCUCUCUCAACCCCCUCAC
Sequence
(OSA-LNCN7865.3):
GUUAGUACUUAUUUUUUCUUGUAAAAAAAGGUGCUUGGUACCUUUUUCUUUUCCUGAAGACCUCUUUUAAGACUUUGCUACCAAUAUGAAAUUCGUGCAUUUCUGAACUAUAACUUGGUUUUGUCUUCUCUCCUUGCAUUUGUUCUUUUCAUGCCAUAUUCAUUCUACAUGUGCAGUAAUAACUUUCUAAUUUACUUGUGAGGUCUGACUGUUUUCACUAAAUCUACCGUACUAUUCUGUCGGUAUUUACUUGGGUGGUGCUUACUUUACUGAGCUAUCUGAAAGGUAACUUUAUGGUUUAUCAAUAAGUAAUUAUUCUCCUUUUUCUUCUGAUGAGCAUAUCUUCGAGGGCCAUCCCAAACCUUUUCAAGAUCUGUCCCCCGUUUUAUUUUGCUCUGAAUCACCAUAUCUUCACUUUUUUUCCCCAGAGAACUUUCCUCUCAUCAUCAGAAGGAAUCUGUGGUUAUCACUCAAUUAACAUCAUCAAUUACGUCCUAGUCUUUUUCAGAAAGUAACUGGUUGCAAGUGUCCACGGAGUAAUGAGGAAGACAGGACAAUUGUGAUGACUGGUAGCUUAUGUGGGAAAAAUGCUUUCUGAGGACAGCAUGGGUUAAGAGUGGACUAUAGUCACUAAAGUAAAACAUGAUUCAUAGCUUAUGUGAUCACAUGAUUUGGCACCACCAGGAGCCUUAAACUAAGCCUUGUUUUACCAGCACUGUCUUUUUGUAAUGGUACUAUCCAUUUUUGUAAGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.12%
ME_num:
MEP:
64.43%
HE_num:
HEP:
15.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.84
Avg Expression:
8.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.04309124870485 | 0.000208447954432662 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.35400036705497 | 0.00727492206571578 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.81815584611323 | 0.0272255576962548 |
| 4 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 2.76675211798148 | 0.0448357643892017 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.37657958211181 | 0.00928218949174845 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.59039451379565 | 4.13706683566061e-12 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.58461008852981 | 0.0253146520635897 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.32123899093432 | 0.0375296314081959 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -2.14352772168542 | 0.000213960224189004 |
| 10 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.64086214725963 | 0.0138951459197017 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.5454915265135 | 0.0384956106760388 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.35699576585926 | 0.0285218244585808 |