Chr:
Chr9
Start:
20872415
End:
20874303
Strand:
+
Ref_name:
OSA-LNCN7862
Sequence
(OSA-LNCN7862.1):
GUUAACGCUAUGAGAAACAGCUAGCUGGUAACGAGCUUUUAAGAAUCUACAUAAGCUAGACAAAAUCGUAUAUCGAUGGGUCAGCUUAAGAACCCCCAUAUGAAAUGAUCAUAUAUACCUUCAAUCUGGGGACCCAAUCUUAUUAAAAAGGAAAAUUGAAAAUCUUGAGGCCCAACGUGAAUCACAUAUACUGCAGUUAUAACUGUUUCAAAACGCCACAAUGUCUCAAAAAAUCUGUAAAAAUUCUGCUCCGAUACGCCAGGCGGGCUAGCUGCCGGCGGAAGGCUGCAGAAAGUGCAGAUUCGUCAGAGGCGGAGACGUUCAUGCAACUCCGAGCGAGAAUUUGCAGCCCGGCCGUAAAUAAUCUAGAGGUGAAUUCCGUCCGGUAAAUAAUCCACGGUUACGAAUUACCCCUAAACUAUUAUGGACGAUCGAAUUACCCCCUAAACUCGAAUAUCAGAUAUUUUACACCCUUAACUAUACAAACCGGGUAAAUAACCCCCGGCUCAAUCCGGGGUGGUUUCAGUACUACGUGGCAGUCCGAUCAGCAUUUUUUUUUUAAAAAACAGUGUGGGCCCCACCUGUAAGACUCUCCGCUCUCUCUUUCACCUCUAACGUCUCAAUCUCUCUCUACUCUCUCAAUCCCCAUCCCCUCUCUUCCUCCUCCUCCCUCACCUGCUGCAGCGAGCGGCGGCAGCCGGCCGGCGCACGGCGACGCGCCAUCUCUCUCCUCUCUACCCUUGCUGUGGUGGUGGCCGGCUGGCAAGGCGCGAGUCCCCCAUUACCAUCGAGCUCGGGUGACCGUACGACGCGCCCCACCUUUGCUUCCACCGGACAUCGUGCUUGUCCCCCAUCUCUGCCUCAUGCUCCCGCGGAGGCUCGCCAACGUCGCCGAUGGGGGUGGUGGACAAGCACGGCAGCCACCUUCGGUGAUGGUUUGUGCACCGAUGUCUGCGCGUCGAUCCGUCUCCGCCGUCGGCCACCGUCUCCUCCUCCAGCCAUAGACGCAGAGAGAGAGAGCAAGCAGGGAGGCAGGGGCCAGGGGGAUGGGAUUUGAGAGGGAUUGGUGGAGGAAAGAGAUGACAUAUGGGUCCUAAGAUUUUUUUUAUUUUUAUUUUGCUGACUGGAUGUCACGUUGGCGGCCACGUAUGCAGACACAAGUCAAAAACCAUCCAAAACAGUGCUCAGGGGGGGUUAUUCGUCCGGUAUACAUAGUUUAGGGGGAACGAUGUCUGGUUUUCGAGUUUAGGGGGAUAAUUCGAUCGACCGCUAUAGUUUAAAAGGGUAAUUCGUAUUUUUUUUCCUUUUUAAUACAUAGAGAUGAUUUCUUGGGUUGAGAUGCAUUUUAGUAGUAAUCCGGAGGUGAAUUCCGGUGAAUUUUGAGUAUUUUAUUUACUACUACUACUUCCAGUUCCAGGAUGCAGUCGUCGUCAGGAAACUGGAGAGGACACCGGGCCAAAUUUAGCUAGGCGACGUGGAUGCACCGGCGUGUGGGCUUCAUUUCCGUGAUGCUUAGAAGGCACGGUUUGCCCUCUCUCGCGAUCGCCUGCCUGGCCCGCACGCUGCCCGCGGCCGCCGGCCGGGGGCAUGUCGCGAUCCGAUCCACGUUUCGCGUGCGGUAUACGUGCUCGAUCAGGUUCAGCUCCCACGGCCACGGGCGCGCGAUUGAUUGAUUCACCGGCCGCGUGGCCGCUUCCGGUUAACAUGCGCGCUCAACGCGGUCACGGUCACGGCGCGUGUGUUGUGUUGUGUUGUGUUGUUGCGGAUUUGAGAUUUGCAUGCAGUUGCAAGCCUCGCUCGCUCGUAUUACGGAUGUCGUAUGUGGUGUGUAUGCCUACCCCGAUUCCACGGUGGGUGAGCUGCAAAGUACCCGUAGUUUUCAGUGAAAA
Sequence
(OSA-LNCN7862.2):
CGAGAAUUUGCAGCCCGGCCGUAAAUAAUCUAGAGGUGAAUUCCGUCCGGUAAAUAAUCCACGGUUACGAAUUACCCCUAAACUAUUAUGGACGAUCGAAUUACCCCCUAAACUCGAAUAUCAGAUAUUUUACACCCUUAACUAUACAAACCGGGUAAAUAACCCCCGGCUCAAUCCGGGGUGGUUUCAGUACUACGUGGCAGUCCGAUCAGCAUUUUUUUUUUAAAAAACAGUGUGGGCCCCACCUGUAAGACUCUCCGCUCUCUCUUUCACCUCUAACGUCUCAAUCUCUCUCUACUCUCUCAAUCCCCAUCCCCUCUCUUCCUCCUCCUCCCUCACCUGCUGCAGCGAGCGGCGGCAGCCGGCCGGCGCACGGCGACGCGCCAUCUCUCUCCUCUCUACCCUUGCUGUGGUGGUGGCCGGCUGGCAAGGCGCGAGUCCCCCAUUACCAUCGAGCUCGGGUGACCGUACGACGCGCCCCACCUUUGCUUCCACCGGACAUCGUGCUUGUCCCCCAUCUCUGCCUCAUGCUCCCGCGGAGGCUCGCCAACGUCGCCGAUGGGGGUGGUGGACAAGCACGGCAGCCACCUUCGGUGAUGGUUUGUGCACCGAUGUCUGCGCGUCGAUCCGUCUCCGCCGUCGGCCACCGUCUCCUCCUCCAGCCAUAGACGCAGAGAGAGAGAGCAAGCAGGGAGGCAGGGGCCAGGGGGAUGGGAUUUGAGAGGGAUUGGUGGAGGAAAGAGAUGACAUAUGGGUCCUAAGAUUUUUUUUAUUUUUAUUUUGCUGACUGGAUGUCACGUUGGCGGCCACGUAUGCAGACACAAGUCAAAAACCAUCCAAAACAGUGCUCAGGGGGGGUUAUUCGUCCGGUAUACAUAGUUUAGGGGGAACGAUGUCUGGUUUUCGAGUUUAGGGGGAUAAUUCGAUCGACCGCUAUAGUUUAAAAGGUUCCAGGAUGCAGUCGUCGUCAGGAAACUGGAGAGGACACCGGGCCAAAUUUAGCUAGGCGACGUGGAUGCACCGGCGUGUGGGCUUCAUUUCCGUGAUGCUUAGAAGGCACGGUUUGCCCUCUCUCGCGAUCGCCUGCCUGGCCCGCACGCUGCCCGCGGCCGCCGGCCGGGGGCAUGUCGCGAUCCGAUCCACGUUUCGCGUGCGGUAUACGUGCUCGAUCAGGUUCAGCUCCCACGGCCACGGGCGCGCGAUUGAUUGAUUCACCGGCCGCGUGGCCGCUUCCGGUUAACAUGCGCGCUCAACGCGGUCACGGUCACGGCGCGUGUGUUGUGUUGUGUUGUGUUGUUGCGGAUUUGAGAUUUGCAUGCAGUUGCAAGCCUCGCUCGCUCGUAUUACGGAUGUCGUAUGUGGUGUGUAUGCCUACCCCGAUUCCACGGUGGGUGAGCUGCAAAGUACCCGUAGUUUUCAGUGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.15%
ME_num:
MEP:
15.45%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
1.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.15236562391668 | 0.0194110593715383 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.37084679587458 | 0.0313407725170439 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.40729681940013 | 0.0091937258488933 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.77277162559226 | 0.0407059232267185 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.41132670681076 | 0.0129188776026204 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.99608524937394 | 0.0324822050804277 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.836344712178 | 0.0144728557429868 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.2831725936281 | 0.0295942224760808 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.38308486015303 | 0.00275733977450862 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.98135921489707 | 0.00562023365926591 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.98128328198955 | 0.00567378393067731 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.98116504610342 | 0.00563784488685007 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.54691055684915 | 0.0275878356347142 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.06167885987488 | 0.00505155010384358 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.32101431271989 | 0.0218222957877782 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.95081408477401 | 0.0174773747920367 |