Chr:
Chr9
Start:
20406112
End:
20406897
Strand:
.
Ref_name:
OSA-LNCN7848
Sequence
(OSA-LNCN7848.1):
UUCACGGCGCCGGGCACACGCUUUUUUUGGGGGGUUGGGGUUAUCUGCUGGCUGUCAAGUGGCUCUCACCUUGCGAUUCCGACUUUGUAAACUAGUAAUUGUGCGGAUUGAUGCUGGUUAGGAGUAAUUUGUUGGGUGGAGGUCAUGUCCAGCUGCUGCUUCACGCUGCAGCUUAGCUGGCUUUGGCUUUGGCCCCCGGGGAGUCUGGAGGAGCACUCAGCAUGUAAAACAUGUUUCUGUUUCAGUUUUUGUUUUACUUAUGAGCAGGAUACAACUUAUGCUUAUCUUGUGGGAGCUAGCUGGAUAAGAAGUGGGGAGGUAUAAAGGGGGAGGUAUUGUGUCAUCUCUACUAGUAUAUCAUGGUAGUAUUAUAUUGGGUUUGGAAGAUAAGAUUGCUGAUGGUUUCCCUUGGAGGAAUAAAUUAACUUUCGAUCAGGGUUGGGCAAUCUUUUGUUUAAUCGAUCGGUGAUGGCUUUUCGGCGGUAAUCUUGUUCCACUCCGACGGCUCUUUGUUUACGCAAUAACCUAGUAUUCACAAAGUGGCUAAUACAAGCUGUUGGCUACUGUACUGUGUAUUAAAGAAGUGGCACUUGUGCUGACCGAGUGUUGAUUUAGUUGCAUACUCAAGCAAACAUUGGGAGCUUAUAUUGUCACUUGAAAACAAACAUUUUAGGGCUUUUCUGGAACGGAUUGAGAGCUUAUAUUAGCACUUACGGAACAAAACACUAGAAUUCCGUUCGAGUGAAAACUAGAUGAUUGCAAAAGCACAAAAAAUAAAUUCUNNNN
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.31%
ME_num:
MEP:
5.28%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 5.59270570109145 | 0.000369885033107683 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 6.23841341630622 | 1.31514577214434e-05 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.25111019283685 | 0.00521426447918217 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.55728055583754 | 0.000228067721949578 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 8.65595910729306 | 3.30847269874769e-07 |