RiceNCexp:Browse

OSA-LNCN7843

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr9

Start:

20116745

End:

20121882

Strand:

Ref_name:

OSA-LNCN7843

Sequence
(OSA-LNCN7843.1):

CUCUUAAAACCGGUGCAAUUUGACUCCCUGGGCUGUUUUGAAGGACGGUUUCGCUGACGUGGCGCCUACGUGGCAGUAUUGACCCGGUCUUCUUUCCACGUGGCGUUGACAUGGCGCUUAGGUGGCAUUAGAAAUAAAAAUAUGCGUGGGACCCAUCUGUCAUUCACACACAAAAUAAAAAAUUGUGGGGCCCACUGACAUGUGGGCCCCACAUGUCAUCCUCUCUCUCUUUCUUCUUCCUCCCUUCUCUCUUUAUUUCUCUUUCUCCUCUCCCCUUCUGCCGGCCGCAGGGAGCAUGGGAGGCUGGAGCUGGAGCGGCGGCGGGCGGGGGCCAGAGCGGCGGUGGAAGCUGAAGCGGUGGCGGCGGCCUUGCCAUCGGCCUCGCUAAGUGGAGAGAGGAGAGGAGAGCAGGUGAGGGAGGAAACGGAUGUGAUGGGUGACAUGAGAGGCGGCGGCGGUGUGUAAGGGCCGGAAGGGAGAGGGAAGAGGCGGAGCCGCCGAGCUCGUGUUGUCGCCGCCACCGCCACCGCCGGUGCCUCCUCCUGCACUCACGCUCGCGACAGCGCUGCCACGUGCUGACCCGGAGCGGCAGCGACGCGUCCCGUGGGUGGUGGCUAUGGCCGCAGCCGACGAGGUCGGAGACGAGAGCGGCGGCGGCGGCGGGCAUACGAGGGGCGGCGGACGGCUGGUCUCGAUCUGGUACUCGGCAUGGUCGUGGAGGUCGACGGCGACGACUAUGAGGAGGAGGAGAUAGAGGGGGCGGGCAGCAGCCGGACGGUCCAGCCCGCCGCCGCCUUUAGCUCCUGCUGCCCAUGCUCCCCACCGUCUACCGCCCACCAUCGCCCACUCGCCCGAGGUCCGCCGCUGCCGCCGCCUCUUUAGCUCCCGCCGCCCAUGCUCCCCACCGUCUACCGCCCACUGUCGCCCACUCGCCCGAGGUCCGCCGCCGUCGCCGCCUCUUUAGCUCCUGCCGCCCAUACUCCCCACCGUCCACCGCCCACCGUCGCCCACUCGCCCGAGGCCCGGUGCGGUAGAAGGAGCUGCUCCCGCGCCCGUCGCCGGAGGUACACCGUCCACCGCCCACCACCACCACCACUCCGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

13.01%

ME_num:

354

MEP:

71.95%

HE_num:

HEP:

14.84%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

callus

Tau :

0.88

Avg Expression:

20.71

Tip: OSA-LNCN7843 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-1.42407092962032	0.0276392380033122
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-1.95358810921826	0.00485848289451377
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.20008965961114	0.034759043025008
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-2.88010041930882	0.00299723240086327
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-1.71003231610293	0.0170591161584419
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.14467185130626	0.000505265571596193
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-2.53546594466907	0.000205984492431292
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-1.17516142237983	0.023210482092098
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.93583390716531	0.00487138255261674
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.84190122890991	0.000588526393384937