Chr:
Chr9
Start:
18669502
End:
18670193
Strand:
-
Ref_name:
OSA-LNCN7820
Sequence
(OSA-LNCN7820.1):
CAGAUCUAAAAAAAUGGUAGAAAAGCAGCAACAUUGGAUGGGCGAUACUACUAGAGUUCACGCAUUUUGCUCAGUAUUCCACUAAACCCACAAAAACUUGCAACUGCUAUACAUCCGACCCUAUUGUUCGACCCUGUCCGACCCUGCCGUAUCUGCUAAUCAAUUUACUCCAACGAGCCAGCUGCUCUCCAUGUGGGCCAGAGCAAGGAGCAGGUAAGUACUGGUCGGAUGCUAAGUCGUACAUACCAGUCGGACGUUUAACAAUUCCCUAUAUCCACAGCGCAUAAACUCCACUAAACCCACAGAUUUGCACACAAACACAGUAACAUAUCAGCAUAUCGAGCACACCAAACAAAGCAGCAAUCAAUGCAGGUCAGCGAGAAUGGGGAGGGCUAGGAAUGGAGAGACGGCGAGUCGGCGACCAUGGCCGGUGCGAGCAUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.17%
ME_num:
MEP:
41.06%
HE_num:
HEP:
10.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.97
Avg Expression:
45.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.86248717029233 | 1.18744713082778e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.00616296581282 | 3.17652300152557e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.79758389918365 | 1.08636863860175e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.12801160522674 | 8.90157831224613e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.93511921988411 | 0.0070614105873048 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.99764053410029 | 0.0118199005537632 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.48200897756957 | 0.00529228419499889 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.83842227374285 | 0.0251159779888362 |
| 9 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 2.71869075380871 | 0.0114932693766469 |
| 10 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.93592094030347 | 0.0211055451478746 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.30108757732802 | 1.19906841413699e-08 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.38360077668849 | 6.1207624215378e-05 |