RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7819

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

18685691

End:

18687032

Strand:

+

Ref_name:

OSA-LNCN7819

Sequence
(OSA-LNCN7819.1):

CUGAGCUGGACACUUGAUCAGUUUAGCUCUCUUGCUCCUCUAGCUGACCACUCUACUAUACACACACAUAUAUACUUUUUUCUUGGUGUAUUAGUAAGCACACCUCAUCGACAUCAAUGGCCACCGUAGAGAUCGAUGUGUAGGUUGAGACCCCGACCACCGUGCUGGCCGAGGAGGCGCCAGUGGAGGCGACGCCGGCGGCCGCCGCCGCCGAGGUGGAGGCGCCGAAGGAGGAGACGCCGGCGGCGCCGGCCGAGGCUGUGGCCGAGGAGGCGGCGCCCGCCGAGGCCGAGGUGGCGGAGACCAAGGAGGCGGAGCCAGCUGCGGCCGAGCCGGCGGCGGAGGAGGUGAAGGAGGCCGAGCCCGAGCCGGCCGAGCCGGAGGCCGAGCCUGCCAAGGAGGAGGUGGCGCCAGAGCCCGCCGCCGCCGCCGAGGCGGAGGCCAAGGAGGCCGAGCCGGCGGCGCAGGUGGCCGAGGAGGUGAAGGAGGAGGAGGCGGCGCCGGCGCCGGCCGCCGAGGAGGUGAAGGUGGAGGAGGCGGCGCCGGUCGCGGAGCCGGAGGCCGAGAAGGCCAGCGAGUGAGUGCAUGCCGGGGAAGGCUGGCUCGCCGUCGUCGUACACCGUGGAGUACAUGCAUGGCCCGCGCGCGCCGCCGCCGCCGGCGACUCGCCGGAGUUGUACGUACGUGUGCGUGUAGCGAGUGAUGAGUUGAGUGAGCUGGAGUGGUAGUACUCGACUCCGUAGGUGUGUGUGGGUACGCGUGACGUGGGGCUAAAUAAAAGAGUUUGUCAUCGAGGGCGGUGGGGCCCAGCGUCAGUGACGCGGUGCCCCUCUCUGGCCCCCACAUGCCUCCGUCGUCGCAGGCGUUGUUUGUCGGUCUUUUGUGCUUUUUUUUUUUCGUGUUUGAUUGGUUUUCAUCGUGUAAUGGGUGCGUUUCUGAGAGUACAUUGUCUGUCUCUAUGUGUGUGCGAUCUCAGCCGUUCAUGGCCGUGUGCCAACCAUUUCUCGCCGUCGGUGAACCUACCGUCUUGUGUGUUGUUGUUUUGAUCGGUUCGUCGUGUAUAUAUGGGUGUGUCACGUUCUGAGAGUACAUUAUCACUGUGCUUUGUGUGCCCGAUCUCAUCCGUUGAUGUGCAUGUGUCAAUCAUUUCUCGCCGUCGGUGAACCUACCGAAAUGUCGAAAGCGAAGCGACCAGCAAUGGUGGCAGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

95

LEP:

19.31%

ME_num:

66

MEP:

13.41%

HE_num:

330

HEP:

67.07%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.88

Avg Expression:

501.14

Tip: OSA-LNCN7819 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.174377288955820.0220909067841
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN3.663897664383871.30750773667583e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.441249127111920.013272882913899
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.527642679957790.00215874732662825
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.060198662830180.0131205357153647