Chr:
Chr9
Start:
18634207
End:
18636191
Strand:
+
Ref_name:
OSA-LNCN7818
Sequence
(OSA-LNCN7818.1):
CCGCCUUCUUGGUCGCCGCGGCCAAGAACGCCACCGCCGCGACCAAGGGCGCCACCGCACGCCUCCGUUCCCUUCCCCGGCACGCCCGCCGUGACGCGAUGCCGCCUCGGCAUCGCGUUCGUCGCCGUGCGCCGCUGCUCGUCCAUGCGCCGCCAUCGGCCUUCCCAUCCUCAACUCGCCGCCGACGCCAUUACCUCCCGUCGGUUUUUGUCUGUUUGCGCAUAGUUGCGGUUACCGGAUUUUCGUCGAUCGUGGAUAUCUUGAAGAUUCAUGAAGCUUCGUGAAGACCCUGAGCAAGGCAAGCCACCCUUGAACAUAUUGAGCCUAUAUUUGAACUUAAUUAUAUUGCUUGCAAAAUAUUAUGCAUUGAUAGGAUUACACUUAAUUUGUUUGCCCCGUCUGAAAGGCAGACCGGUGGGUCUACCCAACUUGUUGCAUCUGAUCCUUCCAUUGUUAAUUGUUAUAUCAUGUUCCCUUGUAACCAUCUAGUUGCGCCUCGAUAUUCGUGCACUCUGUGCGAGUAUCGACGGUUGCCUUCAAACUUAAAAUCUGAGUAACUUCUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.41%
ME_num:
MEP:
11.18%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.52828675448378 | 0.0175210833722093 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.98344530298879 | 0.0225984960616501 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.45147910361597 | 0.029060665362975 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.00422396234094 | 0.00108703262429358 |