Chr:
Chr9
Start:
17980142
End:
17982348
Strand:
.
Ref_name:
OSA-LNCN7810
Sequence
(OSA-LNCN7810.1):
AGAAACACUACUACACAAAGACAUAGUUUUAUAGGUGCCGGAAGUGUAUACUACAAAAUUUAUAUGUAAAUACAUACGUAUGGUAUAUUAGACUACACACUAGAGGGACUAGAGGGGGUACGUCGCGCGGUACCUGGGGCAUGCGCCCAGGCGCGCAAUAACAAGCUCCUCGACAAUACAGUUAUUACAGAUGGCAAGCGUGUGCUCUACAUAUGCCAAAUGGGCCGCUAGGCCUGGGCCUGGGCCGAGAUUAGUCGGGCUUACACGGCCUAACCUACACGUUGGGCUGCCCCGGACCUACCCACUUGUUGCACCAUCGGCAAAGGUACGACCCAAUAAGACUCGGGCCGUGCCGGGCCGGCCCAAAGGCACGAAAGCGCAUCGUGCUUCUCCUUAGAAAAAAAGUCUAUUUUGCCUCCUCCCCCAUCUCUUUGGUCUGCCUCUUAUAUGGCCUUAAUAAGUCUAUUUUUUGCAUCCCUCAUCUUUUUGGGCUGUGACUUACAUCGCGAGAAUAAGUCUGUUUUGACUUCCUCAUCUAUUUAACUCUCUGAUCGUUGAAUUGGGCCAUGCCGGGCCAACCCAUCGAGCCGAGGCAAAGGGCCAAGCACAAUCCAAAGGUUGGGCCAAGCCAAAACCCCGUCCCAUGGGUCGGACCGUCGUGCCUCGGCCCUUUUGGCCAACUUGUGCUCCUAUAGGAAAGGAAUAAGUUCAACCUGGUCCCUUAACUUUACACUUAAUCCGAUUUUCAACCUUAAACCCAAAAACCAGAUACAACUGGCCCUGAAUUGUCAAAACAGGUGCAAACGAGAUCCCUCGGUGGUUUGGAAAGCGCUUUUGGCUGACGUGGCACCUACGUGGUUAGUUUGACUAGAUCUUUGUCCCACGUGGCAAUUCGAUCAGAAAAAUAAAAAACUACGGGCCCACACGUCAGCUCCACACACAAAAUAAUUAAAGAUAGUGGGGCCCACGUGGGCCCCACAUGUCAUCCUCACUCCUUUCUUCCCUCUUCCCUCUCUUUCUUCCUUAUCCUCACGUUUCAUCUCUUUUGGGGAGAGGCGGGCAACAACCUCGGCGAGCGAGGCUAGCGGCAGGUGGAGUGAACCGACAGCGGUGACACCCUCGCCGCCGCCUUCCUCUCCAACGGGUCGUCGUCCUCCGCGGCCUCCGUGGUGGUGACCGUGGCUUCUCACGCUGCUGGCCCAGGAGCUGCAGGAGUCGGAGCGCCCCGACCGCAGGCUCCGCCGACGAGGACGACAACUCCAGUGCCAUCGCCGCCGCGCGCGCCAAGAACGCGCCGCCCUCCAUCGCCGCCACGCUCGAGACGGAGAUGGAGUUCGACGGCGGCGACGGUGGUAUUAAGGGCACGGAUGCGACUGACGCAGCCUGACAGCUUCUUGCGCUUCCCGUUGCCAGCGCGAGCAGGUGCGCGCGGAGACGUCAGUGAGUAGCAGCGGUGGCAUCGGCGGAAGCGUCGGUCCAAUCCGACGCAAGGGUGUCGAUGAGGGAGGCGAGGCCGGGGCUGAGAUCGUUAGGGGAGGCGGAGGUCGCAGAAGCCGUCGGAGCAAUGUAGAGAAGGGGGAGCCCUGUCGCGGGCGUGCCAGCGGGCCACGCUAAGGGAGCCGGAGGUGGACAUGGCUGCAGGUGGCGAUGGAAUUGGUGAAGACCUGGGCUGCGUGAUGAAGUUGGCGGUGGUGUGCUCGUCCUCUAGAUCGGGCGGCGAAAUCAACAGCCGGCGAGGGGCUGCCAGAUCCGCCCGCGACGGAUUGAGGUCAAGGUCGGGGGUUCUUGGGCAGUAGUGACUCGGCACUGGCGGCGAGCCGUCUCACAAAUGAGAAGAUGGGGAGGAGAUAGAGAAAGGAGGGGAUUAGGUGGGGAAAUGGGACCCACUGUCAUGUGGUCCCACUAUUAUUUAAUCUUAUUAUUUGACCGACAUGAGGUCCAACAUUUUUUUAUUUUUUAAAUUGUUAAAUUUUGCUUUAUAUGCCACGUCAGAUGAAAACCGAGUCAAAUUAGCCACGCAAGGGCCACGUCAGCUGAAACUGCCAUCCAAAUCGUCUUGGGUCUUAUUUUGUGCUGGUUUUGACAGUUGAGAGACCCGUUGUAUCUGGUUUUCCGGUUGAAGAAUGAAAAUCAGAUUCGUUGACAAGUUAAGGGACCUCAUAUGAACUUAUUCCCAUAGAAAAUUAGUCUACGGAAAAAGUAUACUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.7%
ME_num:
MEP:
29.47%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
2.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.29300827957221 | 0.00524225179435912 |
2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.19812717369873 | 0.00666983645015021 |