RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7809

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

17851949

End:

17853180

Strand:

-

Ref_name:

OSA-LNCN7809

Sequence
(OSA-LNCN7809.1):

GUAUUUUUCAUGUAGUAAACCACAUCUCCUACAGUUCUACUUCUUUAUAAGCUCCCCUACCUCUACUGUCUCGGACACCAUUACAGUACACCACCUCAAGCUAGUAGCCACCUUCUCCCCAAGCACACACUCUCCUCCCAAACCCUAGCACCAGCUAGCUCUCUCACUCUACUCCAAUGGCGCGCUUCCAGAUCGUGGCCUUGGCCAUGGCGAUGCUCUUCGCCGCCGCAUCAGCUCAGGCCCCGGCGGCCACCCCGACGCCCGCUCCCAAGGCGUCCCCUCCUCCGGCGACGCCGCCGCCGACGCCUGCGCCGGUGUCAGCGCCCCCGGCUCAGGCCCCGGCCACUCCUCCCCCGGCUCCGGCUCCCGCCCCCAAGGCCUCAGCUCCGGCUCCCGCCCCCAAGGCCUCGGCUCCGGCUCCCGUGCCCGCGGCCGCGGCUCCCACCCCGGAGAUCAGCUCGCCACCAGCCCCGUCACCGGCAGGCUUGGCCCCGUCUCCCACCGCCGAGGUGACCCCUCCCCCCAGCGCCGCCGCGUUCUACUGAGAUCGAGGCUGAUGAGAUCCGCCGACCACCUCAUUAAUUUAUUACCCGUCCAUCAGAGGGACCCACCAUUCCUCCUCCUCCUCUCCUGAUCUCCUCCUUUUCCUUCUUCAUCUGUGGUGGUGGUGUUGAGCUGUUUAUUUUAUUUCUCUCUCUAUCUUUUUUUUCUUCCAUUUUUUUGGGCAUUUUUUUUCCAUUCAGGCAUUCGAUUCAGUAGGUGUGUGGGCGUGUGGCGUGGACAGAUUGGUUGGUUGGGUUGGUGUUGUGCUGCUCCUCCAUUCAUCAUCGUACCAGCAGAUCAGAUCUUUGAGCCCCCGUUUUCGUUUGGGUUAUGUACACGUACUGCAGCCGAUCGAUCCGUUGCUGUACCGAUGGAUCUGAGCUGAUGAUGCACUCACUGUGCUCCAGAUCUGGUCGAUCUCCUUUAAUACUCCCAUCUAAAAAUAAGAGGAAUUAUUGGUACGUACGCUGGCGCAGUAUUUCACAGCAUUUCCGGUGGGAUUUUCGCUCAGCUGCG

Sequence
(OSA-LNCN7809.2):

GUAUUUUUCAUGUAGUAAACCACAUCUCCUACAGUUCUACUUCUUUAUAAGCUCCCCUACCUCUACUGUCUCGGACACCAUUACAGUACACCACCUCAAGCUAGUAGCCACCUUCUCCCCAAGCACACACUCUCCUCCCAAACCCUAGCACCAGCUAGCUCUCUCACUCUACUCCAAUGGCGCGCUUCCAGAUCGUGGCCUUGGCCAUGGCGAUGCUCUUCGCCGCCGCAUCAGCUCAGGCCCCGGCGGCCACCCCGACGCCCGCCGCCGCCGUGGCCGCCGCCGCCGCGUUCUACUGAGAUCGAGGCUGAUGAGAUCCGCCGACCACCUCAUUAAUUUAUUACCCGUCCAUCAGAGGGACCCACCAUUCCUCCUCCUCCUCUCCUGAUCUCCUCCUUUUCCUUCUUCAUCUGUGGUGGUGGUGUUGAGCUGUUUAUUUUAUUUCUCUCUCUAUCUUUUUUUUCUUCCAUUUUUUUGGGCAUUUUUUUUCCAUUCAGGCAUUCGAUUCAGUAGGUGUGUGGGCGUGUGGCGUGGACAGAUUGGUUGGUUGGGUUGGUGUUGUGCUGCUCCUCCAUUGUACUAUACAUCUCCCGUUGUUCAAUAUUCCUUUCACUUUGGACUUUUUACUCUCUUUUAUUUUCCCCAAGCGCACUCACCCCAUUUUUUUAAUCUUUCUCCAUUACCCCUUGCAGCAUCAUCGUACCAGCAGAUCAGAUCUUUGAGCCCCCGUUUUCGUUUGGGUUAUGUACACGUACUGCAGCCGAUCGAUCCGUUGCUGUACCGAUGGAUCUGAGCUGAUGAUGCACUCACUGUGCUCCAGAUCUGGUCGAUCUCCUUUAAUACUCCCAUCUAAAAAUAAGAGGAAUUAUUGGUACGUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

255

LEP:

51.83%

ME_num:

123

MEP:

25.0%

HE_num:

113

HEP:

22.97%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_differentiation_zone

Tau :

0.84

Avg Expression:

37.52

Tip: OSA-LNCN7809 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.517064091752850.048579578884289
2IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h-1.990219243182090.0426110501865877
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-2.38066122328180.0256059771108396
4IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h-1.563599603311150.034192931486835
5IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-2.230222309663850.00426677982880907