Chr:
Chr9
Start:
17815309
End:
17816545
Strand:
+
Ref_name:
OSA-LNCN7805
Sequence
(OSA-LNCN7805.1):
GGCGAUUCGGCCACGACGCGAGGCGUGGUGGCUACAGGCAAUCCGGCAACGAUGGCGUGGUGGUUCAUCGGCCGAUCGGCGUCAUGACCUGGGCACAACUGGCGUCGGAGGAGAUCGUCCUCCUCGUUGUUGGAUCGUACGAGAACCGUAUCAAUCAUGGCAGAGGUUUCCGGCCAAACCGUCCAACGAUGGCAGCUGCUCACACGGAUCCUCGAUCAACGAUGGUGUGUCUAGUCAAUGAAUCACGGCAACAACGUCCUGUAGAAACACGUACUGCACCAUGUUUAUGGUUAUUUGAUUUCAGGUUCAGAGCUAAUAUCGAUCUGCCGAAAGUCAGAGGCGACACCUAAUGCAUUUGUUCCAACUCCCAGAGAACUGAAUACAUUCUGAAUUUUUCAGCAGCAUAUAUAUCUACCUCUCGGCGUCUCGGAGGGGGCGGCGUGAUUCAGCGAUGACGGGACGGCGGCGAGAUUCAUCCGCAGCGGCACCAAAUCCACCUCGUCGUUCCCUGGUGCGGCCUUUCGUUCAACGCGAUGGUGUCGGCGGGCGUGCAAAACGACCACCGGCGGCGCCGGCAAUCAGCACGCCAGGCCCAAAGAUUGCAGUCCAAACAUGGGCAGCGCGAGGUUCUGAGGAGCAGCGACGCCGUGCGCGGCUAGUGCCAGCCUCUAAAGCAGAAGCGGCGUAGCUGGAUCCAAGCGGCAACGGCGUGUCGGCGUCCUAGCUUCCAGCUAUGAACCGAAGGCCUGGAUGGCUCAUGCAGGCAGCGACAUGAUCGAGCGAUGGCCACAUGCGUCAAGCAAGGCAGCGACGGCGGAUUAUCUAAUGAUGCUGCCAUGCUGUGGCCUGUGGCCUGUUAUAUAUUGCUUCUCUGUAAAAUUUCUUCCGAUAUGUAGUAGUGAAUAGAUAUAUAUACUGCCUCCUAAAACAAACAGUAAAAAACAGUAUACUGCUAUGCACAAAGUAGUACAUACUGCUGCUUUAUUUGAAGGAUACACUACCUGCUACUGAAAGAAUCAAAGUACAUUACCUGUAAAGUGGUAUAUACUAGUAAUGCAGUGAAUUUGGUAUAUAUACUACUAUCUCGAAUUAGUGGUAUAUAUACUACCUUUGUCGAAAGAAAGUAUGUAUAUUGUUUCAG
Sequence
(OSA-LNCN7805.2):
CACGGAUCCUCGAUCAACGAUGGUGUGUCUAGUCAAUGAAUCACGGCAACAACGUCCUGUAGAAACACCAGCAUAUAUAUCUACCUCUCGGCGUCUCGGAGGGGGCGGCGUGAUUCAGCGAUGACGGGACGGCGGCGAGAUUCAUCCGCAGCGGCACCAAAUCCACCUCGUCGUUCCCUGGUGCGGCCUUUCGUUCAACGCGAUGGUGUCGGCGGGCGUGCAAAACGACCACCGGCGGCGCCGGCAAUCAGCACGCCAGGCCCAAAGAUUGCAGUCCAAACAUGGGCAGCGCGAGGUUCUGAGGAGCAGCGACGCCGUGCGCGGCUAGUGCCAGCCUCUAAAGCAGAAGCGGCGUAGCUGGAUCCAAGCGGCAACGGCGUGUCGGCGUCCUAGCUUCCAGCUAUGAACCGAAGGCCUGGAUGGCUCAUGCAGGCAGCGACAUGAUCGAGCGAUGGCCACAUGCGUCAAGCAAGGCAGCGACGGCGGAUUAUCUAAUGAUGCUGCCAUGCUGUGGCCUGUGGCCUGUUAUAUAUUGCUUCUCUGUAAAAUUUCUUCCGAUAUGUAGUAGUGAAUAGAUAUAUAUACUGCCUCCUAAAACAAACAGUAAAAAACAGUAUACUGCUAUGCACAAAGUAGUACAUACUGCUGCUUUAUUUGAAGGAUACACUACCUGCUACUGAAAGAAUCAAAGUACAUUACCUGUAAAGUGGUAUAUACUAGUAAUGCAGUGAAUUUGGUAUAUAUACUACUAUCUCGAAUUAGUGGUAUAUAUACUACCUUUGUCGAAAGAAAGUAUGUAUAUUGUUUCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.09%
ME_num:
MEP:
6.1%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.88942047679059 | 0.0339280391130046 |
2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -4.2529537928556 | 0.0263994863808647 |