Chr:
Chr9
Start:
17390819
End:
17392754
Strand:
-
Ref_name:
OSA-LNCN7795
Sequence
(OSA-LNCN7795.1):
CUCCAUCCAUUAAUUCUAGUAAUUGACAUGUACAAAAUCAACAAUGACAAGCAUAGUACAUAUUAUCAAAUAGCUUCAUGAGAAGGAACACAACUACAGCUACUGUUCCUAUGAACCAAUUUCUAAUGUCAUCAAUAUCUUUUUUCUGCUUGGACAACUUCUUGAAUGAAUUUUCCAUGUCUGAAAGCCGGUCAGCCAUUUCCAGCUCUAGCUUCAUUUUCUCUCUUCUGCCUUCGUUUUCUCAACAUAACAGUUGAGUGCUUGAGCUGUGGGCAGUCCUACAGAAUAACCAGAGGUUGAAGAAGGAUGCCCACCAUGAACCACCCGCUACUGAACCACCACGCCCGCCACGAACCACCCGCUGCCGACGCCAUCGCCGCCACCACCUCACGGACACGGGCCCAAGCACCAGACACCGCCGCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.89%
ME_num:
MEP:
61.99%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.88
Avg Expression:
19.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.1377925580879 | 1.41063682222972e-30 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.92396421856618 | 1.50594871688395e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.18931548875945 | 5.51444587260659e-37 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.56749832588417 | 3.21429677789568e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.47924611377302 | 8.67229725524799e-53 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.22266223715439 | 7.15029074588667e-35 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.1553390750663 | 0.00336184924278236 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.73019138126118 | 0.0118145692227314 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.97972351797629 | 0.000733862228721334 |