RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7789

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

17067083

End:

17067652

Strand:

+

Ref_name:

OSA-LNCN7789

Sequence
(OSA-LNCN7789.1):

GACGGGGUCGUCGGAGAGGAACCCGUGCCCGCGGGUGGGCACGAGGAGCAGCAGCGCCGAGACGAGGACUCCCACGGAGAGCGCGAGCACGAACACGCACCGGAACGACCUCCACAUCGACGGGCUUCCCCAUUCCGCGCGCAUCUGACUCCCCUCACCCUGACAACACCGCGACACUCUCCCCGCUCCUCCUCCUCCUCCUCCUCACCACCACCGCCGCCGCCGCCGCCGCCGCUGAGGCCGUCGCUCGCAACCGCCUGCGCCCGCGCCGCGCGAGGUGCGGUGAGGGGCGGCGCCUCCUCCUCCUCCUCCAACCUCAGCUGCUGGUGCGCCGACUGUUGGUUGAGUGCGGUGGUGUCCUCGUCGUCACGGCUAGCGUUUUUUUGGUUUUACUCGCCUUCUGUUUUUUCGCGUUUGACGUGGCCGCCCUUCGCGAUCGCGGCCAAAAAUGCGGGGGAUUUUGACAUUUCUGUUUUUU

Sequence
(OSA-LNCN7789.2):

CCGAGACGAGGACUCCCACGGAGAGCGCGAGCACGAACACGCACCGGAACGACGCGGCGCGGCCGAUCGACGGGCUUCCCCAUUCCGCGCGCAUCUGACUCCCCUCACCCUGACAACACCGCGACACUCUCCCCGCUCCUCCUCCUCCUCCUCCUCACCACCACCGCCGCCGCCGCCGCCGCCGCUGAGGCCGUCGCUCGCAACCGCCUGCGCCCGCGCCGCGCGAGGUGCGGUGAGGGGCGGCGCCUCCUCCUCCUCCUCCAACCUCAGCUGCUGGUGCGCCGACUGUUGGUUGAGUGCGGUGGUGUCCUCGUCGUCACGGCUAGCGUUUUUUUGGUUUUACUCGCCUUCUGUUUUUUCGCGUUUGACGUGGCCGCCCUUCGCGAUCGCGGCCAAAAAUGCGGGGGAUUUUGACAUUUCUGUUUUUU

Sequence
(OSA-LNCN7789.3):

AGACGAGGACUCCCACGGAGAGCGCGAGCACGAACACGCACCGGAACGACGCGGCGCGGCCUGCCGCGCCGCCGAGCUCCACAUCGACGGGCUUCCCCAUUCCGCGCGCAUCUGACUCCCCUCACCCUGACAACACCGCGACACUCUCCCCGCUCCUCCUCCUCCUCCUCCUCACCACCACCGCCGCCGCCGCCGCCGCCGCUGAGGCCGUCGCUCGCAACCGCCUGCGCCCGCGCCGCGCGAGGUGCGGUGAGGGGCGGCGCCUCCUCCUCCUCCUCCAACCUCAGCUGCUGGUGCGCCGACUGUUGGUUGAGUGCGGUGGUGUCCUCGUCGUCACGGCUAGCGUUUUUUUGGUUUUACUCGCCUUCUGUUUUUUCGCGUUUGACGUGGCCGCCCUUCGCGAUCGCGGCCAAAAAUGCGGGGGAUUUUGACAUUUCUGUUUUUU

Sequence
(OSA-LNCN7789.4):

GAGGACUCCCACGGAGAGCGCGAGCACGAACACGCACCGGAACGACGCGGCGCGGCCGAUCGCCCCGGCGACGCUCCACAUCGACGGGCUUCCCCAUUCCGCGCGCAUCUGACUCCCCUCACCCUGACAACACCGCGACACUCUCCCCGCUCCUCCUCCUCCUCCUCCUCACCACCACCGCCGCCGCCGCCGCCGCCGCUGAGGCCGUCGCUCGCAACCGCCUGCGCCCGCGCCGCGCGAGGUGCGGUGAGGGGCGGCGCCUCCUCCUCCUCCUCCAACCUCAGCUGCUGGUGCGCCGACUGUUGGUUGAGUGCGGUGGUGUCCUCGUCGUCACGGCUAGCGUUUUUUUGGUUUUACUCGCCUUCUGUUUUUUCGCGUUUGACGUGGCCGCCCUUCGCGAUCGCGGCCAAAAAUGCGGGGGAUUUUGACAUUUCUGUUUUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

196

LEP:

39.84%

ME_num:

205

MEP:

41.67%

HE_num:

90

HEP:

18.29%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.83

Avg Expression:

13.47

Tip: OSA-LNCN7789 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h1.228834718596670.0487356847450434
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)6.819328237011120.0292603226079697