Chr:
Chr9
Start:
16905222
End:
16910365
Strand:
+
Ref_name:
OSA-LNCN7785
Sequence
(OSA-LNCN7785.1):
CAACUUGCGGGAAAAAGCAAGCAGGCUGGCUGCUGGGGACAUAUAAACGAUUCGAUUCCAUGUCCAUAUGGUGCUUGUAGCAGUACUACUCUUGUGCGUCUCCAUCUUGAGGAACUUGUUGGUUGGAUGAGGAUGGGUUAGGUGAAAGCAUGGGGGUGCAUGCUUGAGGGUAAAGGCGUGUAGUUAGCCGAUCAAAUUCUAAUGCUGCAUUUCUGCAGGGAUUUUAUGCACGGGACGAAGUCAGGAGUUGUAAAGCAGGUGGCGCGCAGGGGAAUGGAGCGGCGGCGGCGGUGGCGCGGGGAGCGGCGGCGGUGCCGCCGGCGCACCGGGGAAGGAGGAUUUGUGGCGGCGGCUGCUCACUGCUGCUGCAGUGGGAGGAUCUGUGGCGGCGGCUGCUCGCCGUAGCUGCGGCGCGGAGGGAGGAGCGCUGGCGGCGGCUGCUCGCGCCACUAGGCGCGGAGAGAGGAGUGCUGGCGGCGGCUGCUCACCGCCGCUGGGCGCGGAGGGGGGCACGGGGAGCAGGAGCUUGGCGGCGCAAGUCGAGGAGGGUGGCGCAGCUCGCCGCCGGGCGGGACGCAGCGCAGGAGCUCGGCGCCGCGGGAGCUCGCCGUCGCCCGACGCAGAGGGAGGGGCAUGACCAGCGACGCGGUGAGAAGGAGGCCGUGGAGAGAAGACCUUGACGGCUCGACGCAAAGCACUCGCCCGCUGCUCGCGGCGCAAGAAAGGGGCGGCGUCCUUCUUCUCCCUUUGCGGCGGUGGAGUAGAGAGGGGGCGGAGGUGGUCCCGCGAUGCUGUAGAUCCGACCAUCGGCGUGGUGGAUGGAGGCGGCGAGCCGUUGGUCGUGGUUGUAGGCGAUGAGCGCACCAGCGACAGCACAAUGGGAUAUUUCUGCUUGUGUUGAAAGUGCUAUUGUUUGACAUGUUUUUUUUUUGUUUUUUGUUUUUGGUGGACACAAAUUUGUACCAUGUAUAUUUUUUGCAAUUUAAUAUUCACUAAUUGGGUUAAAUUCACAAGGGUAUAAAUGAAAUUUUUGUCUUGAGUUAACACCGUCACGUUGUCUUCAUGGAAUAGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
70.73%
HE_num:
HEP:
24.19%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.59
Avg Expression:
6.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.14857271576589 | 0.00393054403818826 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.14151371260598 | 6.74341276943277e-31 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.37352458165948 | 1.26420129136664e-24 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.12507331624832 | 0.000338723116609473 |
| 5 | 9311 // leaf // control--/--9311 // leaf // salt | 1.21608229894577 | 0.00155129875577493 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.2381015738973 | 0.0022032616006712 |