Chr:
Chr9
Start:
16864593
End:
16865517
Strand:
.
Ref_name:
OSA-LNCN7782
Sequence
(OSA-LNCN7782.1):
GCCCACAGCUCAGUGAGAAACCAAAAGUGAUGAACCCUAGCUCACAUCCUCAAAGAUAAUUGGCUGAUCUCAAGCCCCCACUUCACUUAUUUCCCACAGUGCGCAAAUUGCAGAAGCAAUCCGGUCGAUGAAAAGCACAAACGUCGGCUAAUUUUACAGCAGCGAUCCAGUCGCUCCGAUGCACGUAAUUAGCAACUUUGGCUCCGUUUGUUACUCGUCAGAGCCAUAACCAAGACUCUAGACGUACGUAAACAUAUAUAUAUUGCGUACAUCACAUUCUCUCGCUGCCUAUACUAUUAAGUUACGGAGUGCUACAUUUAUCACAAAACAAACCAAGAACAGAACAUACUCUUUUUAUCUUAAAAUAAACCAAUCUAACUUAUUUACCAGAUACUCCUACGUUGGUUUAUUUGGGGACAGAACGAGUAGCACCGUACACUCCGUUGCGACACAUACAUAAACUCGCCGGGAUCAACAACAAUCAGAUAACUAACCACGCGGCCCGACCAAACCUGCCGACGGGCUCCGUCACAUCAGCCGUACGUGUGACAACCCACGCUAGCUUAGCUAGCUCCAGCCUCCACUCCACUCCUCUCCUCCAGGCCUCCUCCAGGCCACGGCGAUGCAUCCGCGGAGAGCCCAAGCCGCGGGCAACCCAACCAGAUCCCGCGCGCGAGUCCCCUCGCCUCGCCGUGCUGCAGCCGAUAGCCGAUAGCCCGAUAGGCAGCACGGGUCGAGGAAGCCCGCAUCCGCCGGCGCCGCGCGCGCGCGCGCGGCUGGCCCCUCAAGAAACAGCUGCUUUCCACCGCGGCCGAGCCGAUCGGUGAGUGAUCGUGUGGCCGUGUGGCGUGUGCCGUCCUCGCUACCGGACGAGUACUAGUAGAACUGUAGAAGUAGUUGGUGGGCAAGCAGAAAAAGCGCGAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.24%
ME_num:
MEP:
21.75%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
2.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.17044710445428 | 0.00504176438849609 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.81490293216931 | 0.000934571891652008 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.93017707813868 | 0.0376760053782183 |