Chr:
Chr9
Start:
16754425
End:
16759874
Strand:
+
Ref_name:
OSA-LNCN7779
Sequence
(OSA-LNCN7779.1):
AUAUAAUGUCUCAAUCCCAUUAGGCAAACAUGUCCGGAGAGUGUAGAACUUCAUGACCAAUGUGAAUUGCUGAGGGAUAGCUAGGACAUUGACCGGCAAUAUCUGUACCCUUUACAAGACCGAUCCGUUCACCCUUUUCUCCUUUUGUGUCUUCUGGAUCAAUGACAUCAAGACGUGCCCAGACAAAAGUAGUAGUGCAACUUCAACAAGACACAGCAGCAACCCAGAUGGCCGUGCUUGAAUCAACUGAAGGAGACACAUAGGCCUUCCAACUUUUUAUCAGCGAAUAUGGUCCUAACUUUUGAAAUGCACGUCAUGAAUCUUUUUCUAUAGGCAAAUGUUAUUUUUUUUAAUUUGUAAGGACAACUUUUGCACUUCAUGUGAAAAGUACAAUAGUUACACAUGUAAGUCUCUCUCCCAAAAAAAAGUUACACAUGUAAGAUUUGUGCAUGCAACUAUGAGGAAAAUUGGAAAUGGCUCAUGAAGGGCUAAACUAGUUCGGAUGGCUUGAUUUUUGCAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.93%
ME_num:
MEP:
37.4%
HE_num:
HEP:
29.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.81
Avg Expression:
19.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.81281851742147 | 0.0454104665828254 |
| 2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.52767519797916 | 0.00719364835053173 |