Chr:
Chr9
Start:
15898643
End:
15899457
Strand:
-
Ref_name:
OSA-LNCN7769
Sequence
(OSA-LNCN7769.1):
CUGCUGCCGAUCGAUCGAGCUGUGUGAUGUCGCCGGCGCUUGGAGUCUUGGAGCUUCAUCGAUCAGUUUCCUCCGGGACCAAACUCCAUCCGGCGACAGUGCUGUUGCUUGGUUCCUUCCGUGUACAAGUACACACGGCCGGUCCCCUCCUCUUCCAUGUCCAGGGACCAGUGGGAUGGAGACUUGUGAAUUUGGAGGUUUAAUUUUCCGAGUCGUUUCCGAUGACCUUUGACCUGACCAGGGUCUCAAAGAUACUCCUAUGACGAAACGCGGGGAGCACGGCUUGAAAACGGGGGCUCCUCGCCGUGGAACAAUUCUGCUCGUACAGGCUAGUAAUUACUUAGCCGAGAAGCACAAAGAUGACGAGCAACAGGAAGAAAACGCGGUACAAAUUCUGGACGAAACACGACUGGAGAUGACACCAGCCCAUGACCAGGAUUCGUCACAUGAAACAGCGAUGUGCGAUUUGAUUGGAAUCAGUUCUUGGUAGCCCGUUACUUUCAGAGCCAUGAACACAAACAACAAUGCCAUCAGCAUGUGCGAGCAUAGCACAGCACGGCACGGCAACUCAGGGACUAAAAUUUGAUUAAUACUGGUAUCUGUAUACUACAGGCUUCGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.54%
ME_num:
MEP:
2.64%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 7.32591715187059 | 1.8260691003964e-07 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 7.40754259095291 | 9.91316400069782e-07 |