Chr:
Chr9
Start:
15778803
End:
15780586
Strand:
+
Ref_name:
OSA-LNCN7767
Sequence
(OSA-LNCN7767.1):
GUCAACAUGCAUGCAAUUUAUUAGCUGCCCCAAAUUAGCAGCAUGAUGUGAUAAACGAUGAAGCGAUAUUAUUAUGCUCUGAUAAUUUUGGUCAAAUUUCGUUGCUCGUAGCAAGCUAUAUACUCCAGACACUGACCAUGGUCAAAUUUCUCUGAUCGUAGCAUGUUAAUUUUUCUAAAACUUUAAAAUGCACAGAGAAUUAUUAUCUGAAAAAUAACUACAUUUUUUCCCUUUUCAAAGAAAAGGUAAUCAACAUGACCCAGAACCUCUACACCACUUUUCAUGCCACGGUUUUUUCAAUGCGACCUACACAUUCUUUGUAGACACCCUACACAUUCUUUGAAGACAAAAGGAAACAAGAAUCAUAACCAAGUUGCUCCAGCUUCACACCAAUUUACCAGCAUCGCAAAGAACACCUAAUGAGAACACCCUAAGAUGCUGCACAAUUUCCCUGAUGCCGGCCGGCACAAAAGAGCCCCACAUUGACCUGCAGAUACUCUGAUGGUGGGUUGGUGGCCUACUUAUGAUAAUAGGGCUGGUCCCUGUCAGAAAUCCAAGCUGCAUUGAAGAGAUCAAUUAGUACAUCGAGUUUCUUCGUAAGUAUCAUUACAUAAACUUACUUUUUGGAACAUCAGGUAGAAAUUUAUUUCAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.69%
ME_num:
MEP:
41.87%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.84
Avg Expression:
3.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.3684232132659 | 1.29406473772543e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.52019898058939 | 2.30188453508797e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.1531904978272 | 1.26359425177835e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.93390628658857 | 3.27050856798623e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.96157891215782 | 1.98677444151208e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.3818224299628 | 7.33211979897575e-11 |