Chr:
Chr9
Start:
15268108
End:
15269235
Strand:
-
Ref_name:
OSA-LNCN7756
Sequence
(OSA-LNCN7756.1):
CCCCCGUCCCCGCUCUCCGUGGAGGCCCGACAUAAUAGUGUAUAUGUAGUAUUAUUAUGUAUAUUUGGCCCAUCUGGCCCAUAAAAACCAGGCCCAAAAUAUAGAGUAUAUAAAGCAUUUACAAAACCCUAGCCAUUCCAAUCCCUUAUCCCUUCCGUCCCCAAUCCCCACGCCGUCAUAGGUAGCUAGCGGCGCGCCAGAGCCCACGCAGGGCCACCGCAGCAGGGUCCGGCGCCACCGCAGCAGGUCCCCAUGCCGCCGCGCCCGCGCCCGCGCAGGGCCGCUGCGCCGCCAGGUCCAGCCGCCGCCGUCGUCCGCGCAGGGCCGCCGCGCCGCCUCAGCAGGUCCUAGCGCCGCCGUCAUCCACGCAAGGCUGCCGCUCGCUGCGCCCACGCUCGCGCAAGGCCAUCACGCCGCCAAGUCCCGGCGCCGCUCGUCUCGGUCUCUCGGCGGCACCGAGGACGCCGAGGAUGAAGGCUCGCGGGGAUGGAGGCUCCACGGGGAUAAAUUACCCGCACGGAGAAGGUGAUGGUGAAAGAUGUUGCCCCGUUGCAUUUCACGCUGAUGGUGAUGGGGGAAAUUCUCGUCCGCGGAGGCGGGUCUGGUGGUGUAAUCUCCGACGGGGAAUUUCCCGUUGCCAUGUCUAACGGAGACGUCGCUGUGGGCGGCCGCCAUCGUCGACCUCGCUGCCCCAGGAAGCUCUUUGCCGUGUUGCGCCGCCGCGAGGGUGUUCGCGCACGUGGCGUCUGUCACCAUGGCCUUCCUCUGCCUCCACGCUCGCCACGCCAUCGCCUUCGGCUUCCGCUUCUGGGUCGGCGGCAGCCUCCCCUCCCACGUCGCAACCACCGCCGCCUCUCCGCCACCGUGCUCGCCCGCCGAUGCCGCCUCGCCCUGCCGCUACCCUCCCCUUCUCCCGUGUCUCCGCCGCCGCGUCGCCGGCCGGCCGUCGGACCUCCUUGCCCCAGCGACCUCCUCCCUACCGCUGGCCGGCCUGCCCAGUCUAGAGAGAAGAGUGUGUGUGUGUGUGAGAGAGAGGAGGAAAGGAGAGGAAGGGAGAGGCUGGCCUGUCGACAUGGUAUCCUGA
Sequence
(OSA-LNCN7756.2):
CCCCCGUCCCCGCUCUCCGUGGAGGCCCGACAUAAUAGUGUAUAUGUAGUAUUAUUAUGUAUAUUUGGCCCAUCUGGCCCAUAAAAACCAGGCCCAAAAUAUAGAGUAUAUAAAGCAUUUACAAAACCCUAGCCAUUCCAAUCCCUUAUCCCUUCCGUCCCCAAUCCCCACGCCGUCAUAGGUAGCUAGCGGCGCGCCAGAGCCCACGCAGGGCCACCGCAGCAGGGUCCGGCGCCACCGCAGCAGGUCCCCAUGCCGCCGCGCCCGCGCCCGCGCAGGGCCGCUGCGCCGCCAGGUCCAGCCGCCGCCGUCGUCCGCGCAGGGCUGCCGCUCGCUGCGCCCACGCUCGCGCAAGGCCAUCACGCCGCCAAGUCCCGGCGCCGCUCGUCUCGGUCUCUCGGCGGCACCGAGGACGCCGAGGAUGAAGGCUCGCGGGGAUGGAGGCUCCACGGGGAUAAAUUACCCGCACGGAGAAGGUGAUGGUGAAAGAUGUUGCCCCGUUGCAUUUCACGCUGAUGGUGAUGGGGGAAAUUCUCGUCCGCGGAGGCGGGUCUGGUGGUGUAAUCUCCGACGGGGAAUUUCCCGUUGCCAUGUCUAACGGAGACGUCGCUGUGGGCGGCCGCCAUCGUCGACCUCGCUGCCCCAGGAAGCUCUUUGCCGUGUUGCGCCGCCGCGAGGGUGUUCGCGCACGUGGCGUCUGUCACCAUGGCCUUCCUCUGCCUCCACGCUCGCCACGCCAUCGCCUUCGGCUUCCGCUUCUGGGUCGGCGGCAGCCUCCCCUCCCACGUCGCAACCACCGCCGCCUCUCCGCCACCGUGCUCGCCCGCCGAUGCCGCCUCGCCCUGCCGCUACCCUCCCCUUCUCCCGUGUCUCCGCCGCCGCGUCGCCGGCCGGCCGUCGGACCUCCUUGCCCCAGCGACCUCCUCCCUACCGCUGGCCGGCCUGCCCAGUCUAGAGAGAAGAGUGUGUGUGUGUGUGAGAGAGAGGAGGAAAGGAGAGGAAGGGAGAGGCUGGCCUGUCGACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.8%
ME_num:
MEP:
7.72%
HE_num:
HEP:
17.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.89
Avg Expression:
10.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.80067407845919 | 0.000748361494130487 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.40401194021313 | 2.03038723736306e-05 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.15311479616353 | 0.00114571699272837 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.99049219053805 | 6.24934901804094e-19 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.77898111241006 | 1.61271336393538e-13 |