Chr:
Chr9
Start:
14774945
End:
14778980
Strand:
+
Ref_name:
OSA-LNCN7740
Sequence
(OSA-LNCN7740.1):
UGCAACUACUUCAAAAAUUAGAAAAUCCAAUAAACAAAUUUUAGGAAGCUGUAGUUAUAGAAUUUGAAAAAUAAAUUAAAAGCUAUGGAUUUUCCAGUUUCUUCAUAUUCUUAUAAGCUGGCUAUCAAUAAGAUGGUUUUCUUUUUAGAAGGAGCUCUGUAGUCAUAUAUAUCCUAUCCUAGUUGUUUGUCUGAUUUUAAGAUUCGGCAGCAAAUGGCAGCUCGUAUGGAGAUAGAGAUUUCACGAUCCAUUGUGAUGCGACAUGGCAUGAUUUGUCACACACCUGCAAAGUGAUUGGAAAAAAAAUAGGAUUAAGCGCUGACGGCGGAAGCUUUGCGGUAGUCAAGUGGUCCCUAAUCAUGCGCGUGCUUGUCGUCUUAAGGUGAUCAAAUUGGGAAAGGAAGAAUCACUUCUGUGCUUAUCUCGGAGCUGGAACAGAUUAGGACAGGAUCAGGAUGGGGUGAAAAAAAGAUUUAAAAAAAGAUUAGGACUGAAGUGCACGUUGCCAUCGAUUCCGCUGGCAUUUGCAGCAUGUUUGUGCAGUAUAAUUAGGAAGAAUAAUUUGAUAUCUAAUCUGGGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.26%
ME_num:
MEP:
56.1%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.73
Avg Expression:
3.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.69650345999771 | 0.00110997669155515 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.12593212574365 | 0.0343374703390994 |