Chr:
Chr9
Start:
14611814
End:
14612165
Strand:
+
Ref_name:
OSA-LNCN7734
Sequence
(OSA-LNCN7734.1):
AAGUAAGGUAAAAUAGAAGUCUCAACUCUCAAGUAGUGAUUACACAAUCAUACAGAGAGUGAGUCAAUUCCCAUAGAAGGCAGGCCUACAAUCAAAACUAUAUGUUGUUCAACAACUGACUAUUGUACGCUUAUUCCACAUAGGUAAUCCAUCUUUUAAGUGUGUACUGUUUAACCACAAUAUUCUAAUAGUAUUAUUUGUAAUAAUGAAUAAUGAGAUCUGGGAUCUCAUUUUUCAAAAAACAGAUUGAUCCUGGCCAAGCAAAAUAUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.73%
ME_num:
MEP:
57.52%
HE_num:
HEP:
21.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.69
Avg Expression:
6.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11723997734183 | 0.0108548785226274 |