Chr:
Chr9
Start:
13920450
End:
13921264
Strand:
.
Ref_name:
OSA-LNCN7723
Sequence
(OSA-LNCN7723.1):
UGGGAGAAACUAUUAUAAGUAGCUCGUAUCCUCUGAAUCUUUGGACUCACACCAUUCCUAUACAGCAACCUAGCCAGCUCAGUUAAGCUGAAAUUAAACAAACUGCUGCAAGCUAUAACUAGAGCUAAGUCACAGUUGUACAUCCGGGAGCAGAAGAUGAAAAGAGGAGGCUCGUCGUCGUCGUCGGCGACUGCGGUGACGAUGACGAUGGUCGUGCUGCUGCUCGUCGUCGCAGCGGCGUCGCUGCGUGCCGCCGACGCCGCGGCGGCGGCGCCGCGCCGCCUGCUGGGAGCUGACGGCGGCGGCGGCGGCGGGUCGCCGGCGCUGGUGUCCGAGAGCAAGGCGUCGGCGGGGGCUUCCACCUGCACGCACGACCCCAACACGCCCCCUAGUGGCACUCCUUGCCCACCGCAUAAUUGAUAAUUAAAUCAGCUGCACGUCGUGCAAUUGCAUGCAAGAUUUUGGCUGAUUAAUUCUUUCGUGGCGUUGAUUGAAAUACUACAGGAGUAUAUGUCUAUGUUUAUACAUAUAUAUGUACAACAAGUAUACAUGUUAAUAUUGUUCGUCAUUGGUUGUCGAAAAUAAAAGUAGAGUUAAUUAGUUUCAUAUAUAUCAUUGAUGCACGCAACAUAUAUAGCUCUGAAAGUAGCUUGUAAACAUUACAGAGUAUACUGUAAUUUAUUUUGUUCAGUCCAUUUACUUGUGUGUGUAUAUAUAUACCCCCAGGAUGGUUACACGCUGAAAGAGCAUCAGAUACGAAUUUGUCAUAUUCGUUCAAUAGCGAAAUACAAAGCUAAUCUUAAAUUUGUUAUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
16.46%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
7.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.24261333548892 | 0.0259084957213341 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.60013268865834 | 2.78400996861335e-32 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.6803807108942 | 0.0155398841179509 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.56126792195693 | 0.0145572297592174 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 6.72130692163605 | 4.16998032351011e-37 |