Chr:
Chr9
Start:
13319805
End:
13325826
Strand:
+
Ref_name:
OSA-LNCN7715
Sequence
(OSA-LNCN7715.1):
AUAAAAGAAGCCCAGACAAAGUCUAAUUAGCCUUCCUGCUACAGUAUCGUCUUCAAGCUUGGACAGAGCCCGUGCAGCCGCCGAGCCGUGUGUGCCGCUGCCGAUUCCUCCGCCCGAUUUGCUCGAUUCUCUCAGCCGUUUCUUGAAUUAGUUGAGGAGAUUUGUUUCCCUUAUCCUCCUCUAUCUUUUCCCCCAAAAAUCCUAUUUUAUCCCUUUGAAUUCGACGCGAAUUUGGAUUCGUUUUCGAGUUUAUCUCUCCUUUUCCCGGCGCGAUUCCAUCCGUUCCCGAGCCGAUCUCUCCCUCUUCCGGCUAUAAAUAGCAGCUCCUAAACCUCCUCUUUCGUUUUCCACCCUCGCCCGAGCUCGCCGUCGCCCGUAGCGCCCUAGCCGCCUCCACCCUAGCGCCGCCGCCAUCGCCGUCGCCGAGUCUCCAGCCGUGCCGCUCGUCGCCGUCCAUCGUUGCCUUCGGUCGCCGUCGCCACCACCGGGUUCGCAAGGAGGAGCUGCACACCGUCCACCCCUCGGUCGAAGCCGAAGCCUGCCGGAGCGCCACUGACGCCGUCAACCCGAGCCCGUCGCCGCCUCAAUCUCGUCGCCGGCCGUUUUCCGUCAUCGAUUGUCGUCGCCGUCACCAUCACCCGAGCCAUUGCUACAAAGGUUUGGAGGAAGAAGGGAGGUGCUACCAAAUUUUUUUGUGAAAGUGUUUCGGUGAUAAUAUACAAAUCGAAGGAAUCUAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.96%
ME_num:
MEP:
25.41%
HE_num:
HEP:
14.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.92
Avg Expression:
65.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.74634501125472 | 0.00474201549970961 |