OSA-LNCN7709


Function Link


Basic Info

Chr:

Chr9

Start:

13314414

End:

13315975

Strand:

-

Ref_name:

OSA-LNCN7709

Sequence
(OSA-LNCN7709.1):

UUUAGAAAUUUCGGUUACAAUCCAAACCUAACUCUAUAUCCUAAUCUGUUAUCACAGGUACUUGCCACAUAGUCGUGCAUUGCACGACUUUAAUAAGAUGCCUGUAUAAUCAUUAUGAGAUUGUAAUUUGAAUUUGUUGAGGAUCAAUCCUCUCUAGCAGGAGAUCGUGAGACCCCCCUUUCGUGAGUUCGGCCGGGGGGAGGAGGCGUGCUCCGGACAGUCGAUUAUCCGCGGAUUAAGCCGCUAAAGCUUGCAAAAAACACAGGGAUUAUACAGGUUCAGGCCGCUAUGGAGCGUAACACCCUACUCCUGUGUGUGUGGGAAUCUCUCUCUCUCUGGGGAAUACAAGAGUUCUUCUCCUUUUCUACUUUGAUGGACUCUAGAACUGCACCAAGGGCAUCAUCAACCUGAGGUUAGAGCUAACCCUAGCUUUUUUCCAGUCCAUCCCCCCCUUUUUCGGUGGGCAUGGUCCUCUUUUUAUAUCUCCAGGGGUUACCACAUGCACCCCCUCUAUCUAUCCCUUCAUGGAGACGGGAGGGAACUCCUCCCCCGUGGCUAAUCCUCGAUCCGUGCUUUUACCCGGAGGACUAACCGCGGUCGGCCCUUCGGUGGGGCCCAGUGUCGUCCUCUCCCUGACACGGGGGACAGCCCUGUCAUUCGCUCUUAAAUGAGCGAAUGCCUUCGCCCGGAAGCCAAGCCACGAUUGGCCCCUUGGUGGGGCCCGGCGCCAUCCCCCGCCUGACACAGGGGGAGGCAGGCCUGUCAUUCGCCCUUAAAUGGGCAAAGACCGGUGGCCGCUCUCCUCUGACGGAGAGGAGUCCAGAUGGUGUUCUUGAUGUGACAAUACGUAGCUACCUCCACUCCGCCGGGGACAAAAAAGGCGUGGAGGACUGUUGCACGCCUAUCGGACGUGACCGGUGACAAGCCGGUCACAGGCUGGUCACGUCGAAUUUGACGCUGGCCAGUGGCACGGCUCCACACGUCCGCCCUGACAGCACUAAAUGCUUUGAGGGGCGGUUGGGGCACCGGCCAUUAAUGACCGCCCAGCCUGAUCCUCCCUCGCCAUGCGGCAGCUGGGCAAGGGCCUCGGGCUUAGGUGAGGCAAGGCCCCGAGGGGCCUGACGUGGCACCUCGAUGGGUUGACGUGGCACCCCGAGGGGUCUGACGCCCCACCCCGAGGCCCCCCAAAUCACGUCCGCGCCUUGCGCGACGCGGGGAGCGGAGGUUGGCCCAGGCUGCGGGGCCACGUAUGAGGAAGUAAGGGAAUUUCCCCUUACUUCGCAUACCCCCAGGCCCACAUCUCCGACAGAAUUUAUUAUUUUUUGCAAAAUCUUAGUAUUUGAUACACUUGCCUUUGAAAAGCUUUCGGUUUUCAUGCUUCUACCGUAUGUUCUUAAGAAAUAAGAAUAUUUACUCCGUAGUUUGAUGCAUAAGGCUUAAGGCUUACAGUGACAAUUUAUCGAACAUUAAUUAUAGUUGGUUUUCCUUUUUCUACUAAUGUCUAUUACAAUUCCAAUAGUACUUUAAUUAACUUUGAAGAUGUAUGAGGCCAUGAUAAUCUA

Sequence
(OSA-LNCN7709.2):

UUUAGAAAUUUCGGUUACAAUCCAAACCUAACUCUAUAUCCUAAUCUGUUAUCACAGGUACUUGCCACAUAGUCGUGCAUUGCACGACUUUAAUAAGAUGCCUGUAUAAUCAUUAUGAGAUUGUAAUUUGAAUUUGUUGAGGAUCAAUCCUCUCUAGCAGGAGAUCGUGAGACCCCCCUUUCGUGAGUUCGGCCGGGGGGAGGAGGCGUGCUCCGGACAGUCGAUUAUCCGCGGAUUAAGCCGCUAAAGCUUGCAAAAAACACAGGGAUUAUACAGGUUCAGGCCGCUAUGGAGCGUAACACCCUACUCCUGUGUGUGUGGGAAUCUCUCUCUCUCUGGGGAAUACAAGAGUUCUUCUCCUUUUCUACUUUGAUGGACUCUAGAACUGCACCAAGGGCAUCAUCAACCUGAGGGGUUACCACAUGCACCCCCUCUAUCUAUCCCUUCAUGGAGACGGGAGGGAACUCCUCCCCCGUGGCUAAUCCUCGAUCCGUGCUUUUACCCGGAGGACUAACCGCGGUCGGCCCUUCGGUGGGGCCCAGUGUCGUCCUCUCCCUGACACGGGGGACAGCCCUGUCAUUCGCUCUUAAAUGAGCGAAUGCCUUCGCCCGGAAGCCAAGCCACGAUUGGCCCCUUGGUGGGGCCCGGCGCCAUCCCCCGCCUGACACAGGGGGAGGCAGGCCUGUCAUUCGCCCUUAAAUGGGCAAAGACCGGUGGCCGCUCUCCUCUGACGGAGAGGAGUCCAGAUGGUGUUCUUGAUGUGACAAUACGUAGCUACCUCCACUCCGCCGGGGACAAAAAAGGCGUGGAGGACUGUUGCACGCCUAUCGGACGUGACCGGUGACAAGCCGGUCACAGGCUGGUCACGUCGAAUUUGACGCUGGCCAGUGGCACGGCUCCACACGUCCGCCCUGACAGCACUAAAUGCUUUGAGGGGCGGUUGGGGCACCGGCCAUUAAUGACCGCCCAGCCUGAUCCUCCCUCGCCAUGCGGCAGCUGGGCAAGGGCCUCGGGCUUAGGUGAGGCAAGGCCCCGAGGGGCCUGACGUGGCACCUCGAUGGGUUGACGUGGCACCCCGAGGGGUCUGACGCCCCACCCCGAGGCCCCCCAAAUCACGUCCGCGCCUUGCGCGACGCGGGGAGCGGAGGUUGGCCCAGGCUGCGGGGCCACGUAUGAGGAAGUAAGGGAAUUUCCCCUUACUUCGCAUACCCCCAGGCCCACAUCUCCGACAGAAUUUAUUAUUUUUUGCAAAAUCUUAGUAUUUGAUACACUUGCCUUUGAAAAGCUUUCGGUUUUCAUGCUUCUACCGUAUGUUCUUAAGAAAUAAGAAUAUUUACUCCGUAGUUUGAUGCAUAAGGCUUAAGGCUUACAGUGACAAUUUAUCGAACAUUAAUUAUAGUUGGUUUUCCUUUUUCUACUAAUGUCUAUUACAAUUCCAAUAGUACUUUAAUUAACUUUGAAGAUGUAUGAGGCCAUGAUAAUCUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

459

LEP:

93.29%

ME_num:

26

MEP:

5.28%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.92

Avg Expression:

1.62

Tip: OSA-LNCN7709 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNCN7709 is not a differential expression ncRNA.