Chr:
Chr9
Start:
13159643
End:
13159951
Strand:
.
Ref_name:
OSA-LNCN7704
Sequence
(OSA-LNCN7704.1):
GGGUGGAUUGGGCACGGAGGGGUCUAACAGCAAAUAUGCAGCCACGCUGUACAGCCAUGUAGGACGGUCAAUCCGAUCAAAUGUGCUUUGGACCGCAAUGAUUCACUUAAACAAGUUCAUGGACCUUAAUAUCGAUUUUACAAGACCAUGGAUCUAAGCGACACCACGCUUCAAGUUCAAGGACCGACGGUGUAUUUUACUCAAAUCUCAAUGUUAAGUUGACGGACCUCCAGUGAACUUAUUCUAUUGCUAUUAGCAGUUUGAAAAUUGUUUAGGCCCAACUUUGUGUCCAAAAAAUGUUACUCCCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.11%
ME_num:
MEP:
17.07%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
1.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.8711564460105 | 0.0422867782956939 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.90899486869982 | 0.0292971501537343 |