Chr:
Chr9
Start:
11711065
End:
11712068
Strand:
-
Ref_name:
OSA-LNCN7676
Sequence
(OSA-LNCN7676.1):
CUACAAUCUCUCCGUGAAUGAAUGAAAUAAUGAUACGAGUGUCUCCUAGUGCCUCUCCAACCCAACUAGCCAAGUGACCCAGCAGCGUCGCGCAGAUGUUCUGAGCUCACCGAUGUACGAUCGGAUCGAGCCAGCAGCAGUGCCGGAUCAAUGGCCAGGGGAAAAAAGAUCAGCUGAUUAUUGAGAUCAAACUUGGAGAGGCACAGAAACAAAGCUUCUCACUUCCUCAGAAGCCCUUCCCAUGGUGAAGAUACCUGGCCUUGUUACCAGCCAGCAAUGGCCUGGAGAGCACCGGGAGCCCCCACUGCGACGCGAAGAUGAUGGUCGGGCAGAUGUCGGUGGCGCCCUCCAUCGUCGUCGCCCCGGCACGGCGGAUCUUGGAGGAGAGCUCCGCCACCACCUUCCUUGGCAGGAGGACCGAGGUGAUCCUGCUCCAUUUCAGCUUCUUGACAUGGAAGAGACAGGGGGUGGCUGCCGGCUUACCGUCGAGGGCCGGCAGCCACCGCCACCUGGAUGGCCGCGGCGGGCCACCGUCAUCCCGGCAUUCCAGCCUCUGGUAGUGGAAGAAGCUGGCCGUCCGACCACCGAUGCUGGAUUCCUGCAAGCCCA
Sequence
(OSA-LNCN7676.2):
CUACAAUCUCUCCGUGAAUGAAUGAAAUAAUGAUACGAGUGUCUCCUAGUGCCUCUCCAACCCAACUAGCCAAGUGACCCAGCAGCGUCGCGCAGAUGUUCUGAGCUCACCGAUGUACGAUCGGAUCGAGCCAGCAGCAGUGCCGGAUCAAUGGCCAGGGGAAAAAAGAUCAGCUGAUUAUUGCAACAAUCAAACAUUAUUGAUCCUGUAUGUACUCGGCAUUAACUUGGACUAUACUGAAUUAUCACAAAAAAGGAAGAUCUGAUCAUGGCCAACUAUAGCAAAGUGCCUAAGAUCAGAUCCUGAUCGAUGGGAGACCAACACAAAAGUAUACAACAAUAGAACACACAACUGAAUCUACAGGGUCAACUAAGUAAUUCACCGGACACAAAUCAUCACAUAUUGACACACAAGAACAUCUCACUAGGAGCAGAGAUCAAACUUGGAGAGGCACAGAAACAAAGCUUCUCACUUCCUCAGAAGCCCUUCCCAUGGUGAAGAUACCUGGCCUUGUUACCAGCCAGCAAUGGCCUGGAGAGCACCGGGAGCCCCCACUGCGACGCGAAGAUGAUGGUCGGGCAGAUGUCGGUGGCGCCCUCCAUCGUCGUCGCCCCGGCACGGCGGAUCUUGGAGGAGAGCUCCGCCACCACCUUCCUUGGCAGGAGGACCGAGGUGAUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.11%
ME_num:
MEP:
43.5%
HE_num:
HEP:
37.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.84
Avg Expression:
44.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.46707539474451 | 2.8971156215872e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.22123585484799 | 2.58938950624783e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.59467254951282 | 2.38931579899727e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.36061650568783 | 7.17372131029787e-29 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.41638833763987 | 0.00767513146430912 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.23736813733489 | 0.00344267033847726 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | -2.67315646971533 | 1.35760252451785e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.01848794427807 | 1.18711380141878e-45 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.70130243814204 | 4.76235603236276e-21 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.23035242949039 | 1.33296141075084e-13 |
| 11 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.94005999461625 | 3.28996520984728e-16 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.66480063974629 | 4.86892512032831e-40 |