Chr:
Chr9
Start:
10325726
End:
10327978
Strand:
+
Ref_name:
OSA-LNCN7650
Sequence
(OSA-LNCN7650.1):
CUCGGCCGCCCCUUCGCAGCCGCCGAAGACCACCGGAGCGCCAUCGCCGCCGUCAACCCGAACCGUGCCGCCUUGGAACCUCGCCGCCGGCCGUCGUCCGUCGUCGUCCGUCGUGUUUUCUUGUACCGUUUCCGACGUUCCGGAGGAGAACGUUUUCGUUGAGGAAGGUUUGGAAGCGUUUGUGGAAGCUCAAGUUGAAGAAAAAGGAUCCAGAAAGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCACUGCUGUUUUUUUUUCUUCUUUCACUCCCGAAAUGCUUGAGGAGAUCAGAUGUCCAACGAAAAAAAAGAUCGGAUGAACAAACUACUAAUAGUACCCCAUGUCUCCACACAUUCAUAUGAUGGUCUUCAAAAUGUUUUAUCUUUUAAACUAUUUAUCCAAUUUAUGAUAUGAUCACAUCAUUAUAUUUGUUACAAUUAAAUCUUUACAACAAGAUAUCACAUCAUUGCAUUCCGAUGAAAGAAAAAUAUAUGUUUCAAUCCGUUAAAUUUAAUGUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.81%
ME_num:
MEP:
22.97%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
0.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.94228642965847 | 0.00827195221914651 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.34117605407543 | 0.0439668399805694 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.17931484655576 | 0.0497496042386731 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.47735231574321 | 0.026838588855265 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.50006585182485 | 0.00492879400041092 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.8044851780717 | 0.0164912530896263 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.11797229529656 | 0.0230919154486108 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.00906300125855 | 0.00440880200733608 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.48718556079853 | 0.00173410773257562 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.25616627428045 | 4.00323583005928e-05 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.11957707438618 | 0.001268826056077 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.89776371986306 | 0.00870137695703177 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.47910946447357 | 1.17956579801264e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.67443667908503 | 0.0044959171240224 |