Chr:
Chr9
Start:
9970124
End:
9978641
Strand:
+
Ref_name:
OSA-LNCN7648
Sequence
(OSA-LNCN7648.1):
GGAAGGGAAUAGAAAGCGAACCCACCAUUCGUCGCGCUUCCCCGCAUGCCACACAGUUCGUCUUCACCUGAAUCGCCGCUUUCUGCCUUCGUCGACCGCUCAUCAUCGUCAGCGCCUCAGCCUCAGCAGCGCUGCUCGUUCUCUCCUCUCUGCCUCCCUGCUAUGAACACCACCGGAGGAAGUUCUAGUGCAAAUGCAUCUAGACCAAUACUGAGAAAAAUCUGGACUCUGGAGUGCCUCAACCAAUUCAUAUGGACAAGUUUCCUCGGAUACAGUAAAAGGAAUAGAAUGGCAGUUAUCAUCCCAACAUGAAGACAUAAGAAAAUAUUAGAUACAAUCUCUAAUGACGUGAUUGUCGAUUGUUUCCAUAAAAUGAAACACCGUCGUGAAAAGGGUAAAAAGGAUGCCAUGUACUAUAUUUAUAAAUCUUAUUUCUUAUCUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.44%
ME_num:
MEP:
67.68%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.90
Avg Expression:
13.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.33125551857644 | 0.016719729907922 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.92043274756968 | 0.0413547716696092 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.26552554423139 | 1.13975347494787e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.34522650705959 | 0.0252706641489024 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 5.25664853605674 | 9.44345890309159e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 5.91149378010321 | 9.74970224244379e-08 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.17472304926548 | 0.00236772056872549 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.44635394265741 | 0.0224565001853131 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 3.91624026590673 | 0.0189801547990772 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.25314928097645 | 5.78421362244095e-09 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.91915958776162 | 1.03326034180047e-06 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.32387991849005 | 0.000245351452864848 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.17692883808239 | 0.000440606473334823 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.21016446528562 | 0.00801850741018515 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.122671209552 | 0.048970672041848 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.730135243695 | 0.00920357278822814 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.134288764002 | 0.0265368566642121 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.70136998037959 | 0.000474287937044454 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.26253225649058 | 0.0168274723284392 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.70128822864025 | 0.00048029283811494 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.70118116976072 | 0.000475837889526059 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.09328051738402 | 0.0294475554983287 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.9468708885321 | 0.0286641159927199 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 4.93195785334151 | 0.000116262750736636 |