Chr:
Chr9
Start:
10245767
End:
10246190
Strand:
.
Ref_name:
OSA-LNCN7645
Sequence
(OSA-LNCN7645.1):
UGGGGGGAGUUAACUCCCACACAUGUGGUCGUGGGUUCGAAUCCCACCCAGGCAUAUUUUCGCUCGUUUUUCCUCCCAUGCACGCACGCUUCGUCCCUUCCUCUUCCCAUCCCACGUGCGCUUCACCACGAGCCCGGCUCGGAAUAUGGUUUCUUUGUAUGCCGGGAGAGUAUUUGCGGUGACGGACCUACUCCCAUGCAUGCACGCUUCGUCCCUUCCUCUUCCCAUCCCACGUGCGCUUCGGCGCGAGCAUGGUUUCUUUGUAUGCCGGGAGAGUAUUUGCGGUGAUGGACCUAGAUUGGUCAGAGAUCAUGCGGGAUACUAAGGUGUGUGUAUGGUAAUAAAUAGAGAGCGAGCGUGAGGCUUCCCGGUAUCGCUUUUGAGAGCAAUUGAGUUGAUAGUUGAGUUAGGGUUUCAAGUUUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.57%
ME_num:
MEP:
12.6%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.34696973134937 | 0.0141448892611205 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.12355096716058 | 0.0215897217422274 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.372577579305 | 0.00894344790159507 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.8932080016917 | 0.00229439143780431 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.81036958360246 | 0.0397623624013543 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.96210345059041 | 0.0287152133209699 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.93359255525653 | 0.0254555469695707 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.04792113961222 | 0.00111797647582721 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.96720131890214 | 0.000519900958868476 |