Chr:
Chr9
Start:
10113954
End:
10115311
Strand:
.
Ref_name:
OSA-LNCN7642
Sequence
(OSA-LNCN7642.1):
CUCUGCAUCUCUAAUCCAUAUCCACAUUGAUAAAACAAAUUCACAUCCAAAUUAACUCAUAUCCAUUGCAGAAGCCACAACCACAUUGACACAAACAUUGAAAGUUGUAAAACUUAAGAUCAUUAAUAUAUAAGUAAAUUGCACAUUAGGCUACUAAUUUUAACAAAGUUUCACAUUAGACCAUCCCUUAAUCAAUCUUUUUUUCUUCACUUUAGACCACCCUCUCUUACCUUUUGUUUCACUUUGGACCCAUAUUGUCCUGUAGCUUUUCUAUCUCUUUCUUCUCAUAUAGCUAGAUUCACUAAUAUCAGCCGGCCGGACUACGACUUAUUCACAUGGAUAAUUAAGCUAUUGAUAAUUUAAGGGAGAGUACUUCGGUUGGUUUUCAUUGAUAUGUUCCCUAAUCUCUACACUCGAUUGAUCAUGAGCCUUAAUAUCUUGUUAGUUCAAACCAUCAACUGAUGAAUGUACAAGAUAGGGUUUGGAAAUGUCAAUGUGCUAGGUUUGGGUACCUAAUUAGACUAGGAGGACCAACUUAGGCUCCACCAUUCAGCUGCCAUUUGCACAGAUCAAGCGCAAUGCAAAUCAAAUCAAAUGUCACCACACAAAUGAGAAGAGCAAGAUUCACAUAUUCCACAGAAAUAAAGAGAAAAAAGAAGAGAGAAAUUAUGGAUCUGGAUCUAGAGGAAGAAGAACAAUGGUGGAGCUGUAGAGAUUGCCGCCAGCCGAUGCGGUCAGCUCGCCCUUCCCUCUUGGUCCCCGUCGCAGUACAUCGCUCUGUGUGGUCACCGAUGCCCUUGUGGUCGCCGUCAUCCUUGCCGUGCGCAGUCAUCAUUGCCGUCUCUGCCAAGCCACGUGGUUGCCAUCACCGUCUCCGCCAAGCCAUUGACAUUCCUCCUCGUCACAGAGCAACGCUCCUCCUCAUCGUAGAGAAACCGCCGCCCGCAUGAUUGGAGGGAAGGAGAGGAACCGGUCUACCGCUGGUCCUCCUCCUCACUGAGCCGCCACCGGCUGCCCUCCUCCUCAUCGCUGCUCCUCCUCAUCAAGUCGUUGCCGCCGCUGACCCUCUUCCUCGCCGAGACGAUGCCAGUGGUGGCCCUCCUCAUCGCCGCUCGUCCUCGCGCGAGCUAGUUGCCGCCGCUCCUUGUAGCAGGGCUUGUGUGCUCUGAGGAGAGGGAGAGAAGCAGGGCUUGUGUGCUCUGAGGAGAGGGAGAGAGAAAGAGGAUCUAAUGGUGAUAGAGAGAGAGGGAGAAGAGGUUGUGGAGACGUGGGAAUUUAUUUUUGUAGUGGGUUUUUCGGCCAUCAGUUUUUGCAAGCGGUAGUCUUAGUGGCAAAAAUUAAUUUUUUACAGGUGAACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.35%
ME_num:
MEP:
39.63%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.76
Avg Expression:
1.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.80555130589027 | 5.92328312978548e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.44724704969401 | 0.000196216072065796 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.31199834871968 | 2.37429543276167e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.51475796666911 | 4.12890537479275e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.54981335563848 | 1.67830696932616e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.29734923573109 | 5.86774210889852e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.79746761446543 | 2.67664354034021e-05 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.96929783536524 | 4.98463683151028e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.3200896780376 | 7.87042959576658e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.87851297859899 | 1.43930170981607e-05 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.52535403056902 | 0.00124890271235688 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.09959955881275 | 1.18451409589966e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.44865164939019 | 6.86383705212677e-07 |